Wiki-Pi
About
Search
People
Updates
Search
PRPF40A and CHD3
Number of citations of the paper that reports this interaction (PubMedID
15383276
)
0
Data Source:
HPRD
(two hybrid, in vitro)
PRPF40A
CHD3
Description
pre-mRNA processing factor 40A
chromodomain helicase DNA binding protein 3
Image
No pdb structure
GO Annotations
Cellular Component
Nucleus
Nucleoplasm
U1 SnRNP
Membrane
Nuclear Matrix
Nuclear Speck
U2-type Prespliceosome
Chromatin
Nucleus
Nucleoplasm
Nucleolus
Cytoplasm
Centrosome
Cytoskeleton
NuRD Complex
PML Body
Centriolar Satellite
Molecular Function
RNA Binding
Protein Binding
Nucleotide Binding
Transcription Cis-regulatory Region Binding
DNA Binding
Chromatin Binding
RNA Binding
Helicase Activity
Protein Binding
ATP Binding
Zinc Ion Binding
Hydrolase Activity
ATP Hydrolysis Activity
Histone Binding
Metal Ion Binding
ATP-dependent Chromatin Remodeler Activity
Biological Process
MRNA Splicing, Via Spliceosome
MRNA Processing
Cytoskeleton Organization
Regulation Of Cell Shape
RNA Splicing
Cell Migration
Regulation Of Cytokinesis
MRNA Cis Splicing, Via Spliceosome
Cell Division
Negative Regulation Of Transcription By RNA Polymerase II
Chromatin Organization
Chromatin Remodeling
Regulation Of DNA-templated Transcription
Spindle Organization
Centrosome Cycle
Regulation Of Cell Fate Specification
Negative Regulation Of DNA-templated Transcription
Positive Regulation Of DNA-templated Transcription
Regulation Of Stem Cell Differentiation
Pathways
mRNA Splicing - Major Pathway
HDACs deacetylate histones
ERCC6 (CSB) and EHMT2 (G9a) positively regulate rRNA expression
SUMOylation of chromatin organization proteins
Regulation of TP53 Activity through Acetylation
RNA Polymerase I Transcription Initiation
Regulation of PTEN gene transcription
Regulation of PTEN gene transcription
Potential therapeutics for SARS
Regulation of endogenous retroelements by KRAB-ZFP proteins
Transcriptional regulation of brown and beige adipocyte differentiation by EBF2
Regulation of endogenous retroelements by Piwi-interacting RNAs (piRNAs)
Drugs
Diseases
GWAS
Heel bone mineral density (
30598549
)
Memory dysfunction in frontotemporal lobe dementia (
29724592
)
Metabolite levels (
23823483
)
Pulse pressure (
30224653
)
Refractive error (
32231278
)
Ischemic stroke (
26089329
)
Macular thickness (
30535121
)
Prostate cancer (
29892016
)
Refractive error (
32231278
)
Stroke (
26089329
)
Interacting Genes
132 interacting genes:
ABI1
AKAP8L
APBB1IP
ARFGEF2
ASXL2
ATAD3A
BAG6
BEND7
BRD4
CAP2
CCNL1
CCT2
CCT4
CCT7
CDK12
CDK13
CHD3
CHERP
CPSF6
CT45A1
CUL1
CYFIP1
CYFIP2
DAAM1
DDIT4L
DHX15
DHX8
DHX9
DIAPH1
DZIP1
DZIP1L
ENAH
ERG
EVL
FASLG
FMN1
FMNL1
FMNL2
FMNL3
FN1
FNBP4
FRA10AC1
GAPDH
HIPK1
HNRNPF
HNRNPK
HNRNPU
HNRNPUL1
HSPB1
HSPG2
HTT
IL1RAP
KMT2B
LARP7
LTBP3
MAP1LC3A
MECP2
MMP11
NCKAP1L
NKAP
NKAPD1
NONO
PCBP2
PDCD7
PECAM1
PFKL
PIAS1
PIAS3
PIAS4
PICK1
PPIG
PRKAR1A
PSG5
PTBP1
PTPRF
RBM39
RBMX2
RCC2
RLF
RNF10
RPL4
RPLP0
SDCBP
SDCBP2
SDK1
SERPINB9
SF1
SF3A1
SF3A2
SF3A3
SF3B2
SF3B3
SFPQ
SMAD4
SNIP1
SNRNP70
SON
SPMIP2
SREK1
SREK1IP1
SRPK2
STIM2
TCEAL9
TMEM132D
U2AF1
U2AF2
U2SURP
UBE2I
UBE2K
UBQLN1
UBQLN2
UBQLN4
UBR4
USP7
VASP
VCL
WAS
WASF2
WASL
WBP11
WBP4
WIPF1
XRCC6
YBX1
YLPM1
YWHAG
ZCCHC10
ZCCHC8
ZFHX3
ZHX1
ZNF341
ZNF451
101 interacting genes:
ACTR1B
ADH5
AIMP2
ATP5IF1
BARD1
BCL6
BHLHE40
C4orf17
CASP6
CASP8
CBX4
CPE
CRCT1
CREB1
CREBBP
CSTF2
CTBP1
CTTN
ENTR1
ETV5
FABP4
FBP2
FUBP1
GADD45A
GIT1
GPS2
GSK3B
HABP4
HSD17B10
HSPH1
HTT
IK
IKZF1
IKZF3
IMMT
IVNS1ABP
KIF15
KPNA2
KPNB1
LRIF1
LUC7L2
MAFG
MAN2A2
MX1
MYB
NEFL
NR1H2
NR4A1
PAICS
PCMT1
PIAS1
PIAS4
PLK4
PRG2
PRPF40A
PSME1
PTN
PTPRS
PUF60
RAD51
RETREG2
RGS2
RIF1
RNF10
RPL29
SAFB
SAT1
SATB1
SERBP1
SERF2
SETX
SGSM2
SIRT6
SKIL
SLC27A6
SPOP
SRRT
STIP1
SUMO1
SUMO2
TAL1
TCERG1
THOC7
TNFRSF14
TNNT1
TP53
TP73
TRIM28
TRIM54
TSC22D1
TSPAN6
TTR
TXNDC9
UBA3
UBC
UBE2I
UROD
VIM
XRCC4
YAE1
ZHX1
Entrez ID
55660
1107
HPRD ID
10995
09071
Ensembl ID
ENSG00000196504
ENSG00000170004
Uniprot IDs
A0A7N4I394
A0A8Q3SIG7
A0A8V8TM61
F5H578
O75400
A0A8V8TR54
B3KWV4
Q12873
Q2TAZ1
PDB IDs
1UZC
1YWI
1YWJ
1ZR7
2CQN
2DYF
2KZG
2L5F
2L9V
2LKS
8PXW
8PXX
Enriched GO Terms of Interacting Partners
?
RNA Splicing
MRNA Processing
MRNA Metabolic Process
RNA Processing
MRNA Splicing, Via Spliceosome
RNA Splicing, Via Transesterification Reactions
RNA Binding
Nuclear Speck
Nucleic Acid Binding
Spliceosomal Complex
Nucleoplasm
Nucleus
Spliceosomal Complex Assembly
RNA Metabolic Process
U2 SnRNP
Catalytic Step 2 Spliceosome
Nucleic Acid Metabolic Process
U2-type Prespliceosome Assembly
Actin Binding
U2-type Precatalytic Spliceosome
Profilin Binding
SCAR Complex
Cellular Component Assembly
Actin Polymerization Or Depolymerization
Regulation Of RNA Splicing
Nucleobase-containing Compound Metabolic Process
Ribonucleoprotein Complex
MRNA 3'-splice Site Recognition
Regulation Of MRNA Processing
Regulation Of MRNA Splicing, Via Spliceosome
Macromolecule Metabolic Process
Regulation Of Primary Metabolic Process
Protein-RNA Complex Assembly
Actin Filament-based Process
Positive Regulation Of Protein Localization To Cajal Body
Positive Regulation Of Metabolic Process
Protein Binding
Alternative MRNA Splicing, Via Spliceosome
U12-type Spliceosomal Complex
Regulation Of Macromolecule Metabolic Process
PML Body
SUMO Ligase Activity
Cytosol
U2-type Spliceosomal Complex
Positive Regulation Of Macromolecule Metabolic Process
Actin Cytoskeleton Organization
Focal Adhesion
Regulation Of Metabolic Process
U2-type Prespliceosome
CRD-mediated MRNA Stability Complex
Nucleoplasm
Nucleus
Negative Regulation Of Transcription By RNA Polymerase II
Identical Protein Binding
Negative Regulation Of Nucleobase-containing Compound Metabolic Process
Negative Regulation Of RNA Biosynthetic Process
Negative Regulation Of DNA-templated Transcription
Negative Regulation Of Biosynthetic Process
SUMO Transferase Activity
Negative Regulation Of Macromolecule Biosynthetic Process
Negative Regulation Of RNA Metabolic Process
Regulation Of Nucleobase-containing Compound Metabolic Process
Negative Regulation Of Macromolecule Metabolic Process
Regulation Of Transcription By RNA Polymerase II
Regulation Of RNA Metabolic Process
PML Body
Protein Sumoylation
Regulation Of DNA-templated Transcription
Negative Regulation Of Metabolic Process
Regulation Of RNA Biosynthetic Process
Cytoplasm
Regulation Of Macromolecule Metabolic Process
Regulation Of Primary Metabolic Process
Positive Regulation Of Apoptotic Process
Regulation Of Metabolic Process
Regulation Of Macromolecule Biosynthetic Process
Positive Regulation Of Programmed Cell Death
RNA Binding
RNA Polymerase II-specific DNA-binding Transcription Factor Binding
Regulation Of Gene Expression
Ubiquitin Protein Ligase Binding
Regulation Of Cell Development
Presynaptic Cytosol
Postsynaptic Cytosol
Enzyme Binding
Positive Regulation Of Metabolic Process
Nucleic Acid Metabolic Process
Nuclear Speck
Regulation Of Neurogenesis
Macromolecule Metabolic Process
DNA Repair
Positive Regulation Of Macromolecule Metabolic Process
Regulation Of Gliogenesis
Protein-containing Complex
Regulation Of Proteolysis
Positive Regulation Of Neuron Apoptotic Process
Regulation Of Cellular Response To Stress
Regulation Of Cell Differentiation
Transcription Corepressor Activity
Promoter-specific Chromatin Binding
Tagcloud
?
Tagcloud (Difference)
?
Tagcloud (Intersection)
?