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SF3B4 and DDX42
Number of citations of the paper that reports this interaction (PubMedID
35271311
)
106
Data Source:
BioGRID
(affinity chromatography technology, affinity chromatography technology, biochemical, two hybrid)
SF3B4
DDX42
Description
splicing factor 3b subunit 4
DEAD-box helicase 42
Image
GO Annotations
Cellular Component
Nucleus
Nucleoplasm
Spliceosomal Complex
U2-type Spliceosomal Complex
U2 SnRNP
U12-type Spliceosomal Complex
U2-type Precatalytic Spliceosome
Precatalytic Spliceosome
Nucleus
Nucleoplasm
Cytoplasm
Cytosol
Cajal Body
Membrane
Nuclear Speck
U2-type Prespliceosome
Molecular Function
Nucleic Acid Binding
RNA Binding
Protein Binding
Splicing Factor Binding
Nucleotide Binding
Nucleic Acid Binding
RNA Binding
RNA Helicase Activity
Helicase Activity
Protein Binding
ATP Binding
Hydrolase Activity
ATP Hydrolysis Activity
Biological Process
RNA Splicing, Via Transesterification Reactions
MRNA Splicing, Via Spliceosome
MRNA Processing
RNA Splicing
U2-type Prespliceosome Assembly
Intracellular Protein Localization
Regulation Of Apoptotic Process
U2-type Prespliceosome Assembly
Pathways
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway
Drugs
Diseases
GWAS
Anthropometric traits (
30166351
)
Anthropometric traits (multi-trait analysis) (
30166351
)
Birth length (
25281659
)
Body fat distribution (leg fat ratio) (
30664634
)
Body fat distribution (trunk fat ratio) (
30664634
)
Height (
18391951
20881960
31562340
)
Infant length (
25281659
)
Waist circumference adjusted for BMI (adjusted for smoking behaviour) (
28443625
)
Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction) (
28443625
)
Waist circumference adjusted for BMI in non-smokers (
28443625
)
Waist circumference adjusted for body mass index (
25673412
)
Body mass index (
25673413
)
Hemoglobin (
32888494
)
Hip circumference adjusted for BMI (
25673412
)
Interacting Genes
115 interacting genes:
APBB1
BAG3
BAG4
BAIAP2
BMPR1A
CD2BP2
CHERP
CPSF7
CTTN
CWF19L2
DDX17
DDX42
DMRTB1
EEF1A1
EFTUD2
EWSR1
FARSB
FKBP1A
FRK
GRB2
HNRNPD
HNRNPF
HNRNPH1
HNRNPUL1
HSPB7
ILF3
ITSN1
KHDRBS2
MAPK9
METTL17
MIR1-1
MIR106A
MIR106B
MIR107
MIR10B
MIR128-1
MIR128-2
MIR138-1
MIR138-2
MIR141
MIR145
MIR155
MIR15B
MIR16-1
MIR16-2
MIR17
MIR18B
MIR19A
MIR19B1
MIR19B2
MIR200A
MIR200B
MIR200C
MIR205
MIR20B
MIR21
MIR221
MIR222
MIR25
MIR29A
MIR29C
MIR31
MIR34A
MIR34B
MIR34C
MIR363
MIR429
MIR451A
MIR7-1
MIR7-3
MIR9-1
MIR92A1
MIR92A2
MIR93
MIRLET7A1
MIRLET7A2
MIRLET7A3
MIRLET7C
MIRLET7D
MIRLET7E
MIRLET7F1
MIRLET7G
MIRLET7I
NCK2
NUB1
OGT
PPP1R16B
PRPF6
QARS1
RAMAC
RBFOX2
RBM10
RBM39
RBM4
RPP25
SEC24D
SF1
SF3B2
SFPQ
SRSF6
SS18L1
SUMO4
TCAF1
TCERG1
TFG
TLE5
TRAF4
UBASH3A
WBP4
WDR4
WDR77
WHR1
ZCCHC10
ZNF3
ZNF48
13 interacting genes:
APP
DHX15
FBXO25
LINC00624
MAILR
MDM2
PRPF19
RECQL5
RNF10
SF3A1
SF3B4
SNRPC
U2SURP
Entrez ID
10262
11325
HPRD ID
12028
09909
Ensembl ID
ENSG00000143368
ENSG00000198231
Uniprot IDs
B3KUJ0
Q15427
Q86XP3
PDB IDs
1X5T
5GVQ
5Z56
5Z57
5Z58
6AH0
6AHD
6QX9
6Y53
6Y5Q
7ABG
7ABH
7ABI
7DVQ
7EVO
7ONB
7QTT
7VPX
8CH6
8H6E
8H6J
8H6K
8H6L
8HK1
8I0P
8I0R
8I0S
8I0T
8I0U
8I0V
8QO9
8QXD
8QZS
8R08
8R09
8R0A
8R0B
8RM5
8Y7E
7EVN
8DPE
8HK1
Enriched GO Terms of Interacting Partners
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MiRNA-mediated Post-transcriptional Gene Silencing
Regulatory NcRNA-mediated Post-transcriptional Gene Silencing
Post-transcriptional Gene Silencing
MRNA Base-pairing Post-transcriptional Repressor Activity
RISC Complex
Regulatory NcRNA-mediated Gene Silencing
Post-transcriptional Regulation Of Gene Expression
MiRNA-mediated Gene Silencing By Inhibition Of Translation
Negative Regulation Of Gene Expression
MRNA 3'-UTR Binding
Negative Regulation Of Macromolecule Biosynthetic Process
Negative Regulation Of Biosynthetic Process
Negative Regulation Of Macromolecule Metabolic Process
Negative Regulation Of Translation
Negative Regulation Of Metabolic Process
Extracellular Vesicle
MiRNA-mediated Gene Silencing By MRNA Destabilization
Regulation Of Macromolecule Metabolic Process
Regulation Of Gene Expression
Regulation Of Metabolic Process
Regulation Of Macromolecule Biosynthetic Process
Regulation Of Translation
Regulation Of MRNA Metabolic Process
MRNA Destabilization
RNA Destabilization
Negative Regulation Of Cell Migration
Negative Regulation Of Cell Motility
Negative Regulation Of Angiogenesis
Positive Regulation Of MRNA Catabolic Process
Negative Regulation Of Vasculature Development
Negative Regulation Of Locomotion
Positive Regulation Of MRNA Metabolic Process
Regulation Of Angiogenesis
Regulation Of Vasculature Development
Regulation Of RNA Stability
Regulation Of MRNA Stability
Negative Regulation Of Vascular Endothelial Growth Factor Production
Negative Regulation Of Cytokine Production
Negative Regulation Of Protein Metabolic Process
Negative Regulation Of Developmental Process
Negative Regulation Of Multicellular Organismal Process
Regulation Of Blood Vessel Endothelial Cell Migration
Regulation Of Sprouting Angiogenesis
MRNA Processing
Negative Regulation Of Signal Transduction
Regulation Of Cell Migration
Regulation Of Endothelial Cell Migration
Negative Regulation Of Transforming Growth Factor Beta Receptor Signaling Pathway
Regulation Of Locomotion
Regulation Of Cell Motility
MRNA Splicing, Via Spliceosome
Spliceosomal Complex
RNA Splicing, Via Transesterification Reactions
U2 SnRNP
RNA Splicing
Spliceosomal Complex Assembly
MRNA Processing
Protein-RNA Complex Assembly
RNA Processing
Response To Alkaloid
Nucleic Acid Binding
MRNA Metabolic Process
U2-type Prespliceosome
Protein-containing Complex Assembly
U12-type Spliceosomal Complex
U2-type Prespliceosome Assembly
Amyloid Fibril Formation
U2-type Spliceosomal Complex
MRNA Splice Site Recognition
Protein-containing Complex Organization
Cellular Response To Alkaloid
Macromolecule Metabolic Process
Spliceosomal SnRNP Assembly
Amyloid-beta Complex
Growth Cone Lamellipodium
Regulation Of Response To Calcium Ion
Amylin Binding
Positive Regulation Of Toll Signaling Pathway
Nucleus
Response To Formaldehyde
Cellular Response To Vitamin B1
U2-type Precatalytic Spliceosome
Ubiquitin-protein Transferase Activity
Protein Ubiquitination
Protein Autoubiquitination
Acetylcholine Receptor Activator Activity
Lipoprotein Particle
Regulation Of Receptor Internalization
Positive Regulation Of Protein Import
Protein Modification By Small Protein Conjugation
Mitotic DNA-templated DNA Replication
PTB Domain Binding
Collateral Sprouting In Absence Of Injury
Regulation Of Protein Import
Endosome To Plasma Membrane Transport Vesicle
Positive Regulation Of Endothelin Production
Growth Cone Filopodium
Phospholipase D-activating G Protein-coupled Receptor Signaling Pathway
Microglia Development
Positive Regulation Of G Protein-coupled Receptor Internalization
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Tagcloud (Difference)
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Tagcloud (Intersection)
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