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SF3B4 and MIR18B
Number of citations of the paper that reports this interaction (PubMedID
28431233
)
0
Data Source:
BioGRID
(unspecified method)
SF3B4
MIR18B
Description
splicing factor 3b subunit 4
microRNA 18b
Image
No pdb structure
GO Annotations
Cellular Component
Nucleus
Nucleoplasm
Spliceosomal Complex
U2-type Spliceosomal Complex
U2 SnRNP
U12-type Spliceosomal Complex
U2-type Precatalytic Spliceosome
Precatalytic Spliceosome
RISC Complex
Molecular Function
Nucleic Acid Binding
RNA Binding
Protein Binding
Splicing Factor Binding
MRNA Base-pairing Post-transcriptional Repressor Activity
Biological Process
RNA Splicing, Via Transesterification Reactions
MRNA Splicing, Via Spliceosome
MRNA Processing
RNA Splicing
U2-type Prespliceosome Assembly
Negative Regulation Of Epithelial Cell Differentiation
MiRNA-mediated Post-transcriptional Gene Silencing
Pathways
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway
Drugs
Diseases
GWAS
Anthropometric traits (
30166351
)
Anthropometric traits (multi-trait analysis) (
30166351
)
Birth length (
25281659
)
Body fat distribution (leg fat ratio) (
30664634
)
Body fat distribution (trunk fat ratio) (
30664634
)
Height (
18391951
20881960
31562340
)
Infant length (
25281659
)
Waist circumference adjusted for BMI (adjusted for smoking behaviour) (
28443625
)
Waist circumference adjusted for BMI (joint analysis main effects and smoking interaction) (
28443625
)
Waist circumference adjusted for BMI in non-smokers (
28443625
)
Waist circumference adjusted for body mass index (
25673412
)
Interacting Genes
115 interacting genes:
APBB1
BAG3
BAG4
BAIAP2
BMPR1A
CD2BP2
CHERP
CPSF7
CTTN
CWF19L2
DDX17
DDX42
DMRTB1
EEF1A1
EFTUD2
EWSR1
FARSB
FKBP1A
FRK
GRB2
HNRNPD
HNRNPF
HNRNPH1
HNRNPUL1
HSPB7
ILF3
ITSN1
KHDRBS2
MAPK9
METTL17
MIR1-1
MIR106A
MIR106B
MIR107
MIR10B
MIR128-1
MIR128-2
MIR138-1
MIR138-2
MIR141
MIR145
MIR155
MIR15B
MIR16-1
MIR16-2
MIR17
MIR18B
MIR19A
MIR19B1
MIR19B2
MIR200A
MIR200B
MIR200C
MIR205
MIR20B
MIR21
MIR221
MIR222
MIR25
MIR29A
MIR29C
MIR31
MIR34A
MIR34B
MIR34C
MIR363
MIR429
MIR451A
MIR7-1
MIR7-3
MIR9-1
MIR92A1
MIR92A2
MIR93
MIRLET7A1
MIRLET7A2
MIRLET7A3
MIRLET7C
MIRLET7D
MIRLET7E
MIRLET7F1
MIRLET7G
MIRLET7I
NCK2
NUB1
OGT
PPP1R16B
PRPF6
QARS1
RAMAC
RBFOX2
RBM10
RBM39
RBM4
RPP25
SEC24D
SF1
SF3B2
SFPQ
SRSF6
SS18L1
SUMO4
TCAF1
TCERG1
TFG
TLE5
TRAF4
UBASH3A
WBP4
WDR4
WDR77
WHR1
ZCCHC10
ZNF3
ZNF48
84 interacting genes:
APOBEC3B
C1QBP
CELF1
CELF2
CPSF1
CPSF6
CPSF7
DARS1
DDX1
DDX21
DDX3X
DDX3Y
DHX36
EIF2AK2
EPRS1
FAM98A
FAM98B
FUS
GRSF1
HARS2
HNRNPA0
HNRNPA1
HNRNPA2B1
HNRNPA3
HNRNPF
HNRNPH1
HNRNPH2
HNRNPH3
HNRNPK
HNRNPL
HNRNPM
HNRNPR
IARS1
IGF2BP1
IGF2BP2
IGF2BP3
KARS1
LARP7
LARS1
LIN28A
LRPPRC
MARS1
MATR3
MSI2
NOL6
NONO
NUDT16L1
NUDT21
P3H1
PDCD11
PGAM5
PLOD1
PRMT1
PTBP1
PTBP3
PTCD3
PUF60
PUM1
PURA
QARS1
RARS1
RBFOX2
RBM14
RTCB
SART3
SF3A1
SF3B1
SF3B2
SF3B3
SF3B4
SFPQ
SYNCRIP
TAF15
TRA2B
TRIM26
TRIM71
U2SURP
UPF1
UTP20
YBX1
YBX2
YBX3
ZFR
ZNF346
Entrez ID
10262
574033
HPRD ID
12028
Ensembl ID
ENSG00000143368
ENSG00000283931
Uniprot IDs
B3KUJ0
Q15427
PDB IDs
1X5T
5GVQ
5Z56
5Z57
5Z58
6AH0
6AHD
6QX9
6Y53
6Y5Q
7ABG
7ABH
7ABI
7DVQ
7EVO
7ONB
7QTT
7VPX
8CH6
8H6E
8H6J
8H6K
8H6L
8HK1
8I0P
8I0R
8I0S
8I0T
8I0U
8I0V
8QO9
8QXD
8QZS
8R08
8R09
8R0A
8R0B
8RM5
8Y7E
Enriched GO Terms of Interacting Partners
?
MiRNA-mediated Post-transcriptional Gene Silencing
Regulatory NcRNA-mediated Post-transcriptional Gene Silencing
Post-transcriptional Gene Silencing
MRNA Base-pairing Post-transcriptional Repressor Activity
RISC Complex
Regulatory NcRNA-mediated Gene Silencing
Post-transcriptional Regulation Of Gene Expression
MiRNA-mediated Gene Silencing By Inhibition Of Translation
Negative Regulation Of Gene Expression
MRNA 3'-UTR Binding
Negative Regulation Of Macromolecule Biosynthetic Process
Negative Regulation Of Biosynthetic Process
Negative Regulation Of Macromolecule Metabolic Process
Negative Regulation Of Translation
Negative Regulation Of Metabolic Process
Extracellular Vesicle
MiRNA-mediated Gene Silencing By MRNA Destabilization
Regulation Of Macromolecule Metabolic Process
Regulation Of Gene Expression
Regulation Of Metabolic Process
Regulation Of Macromolecule Biosynthetic Process
Regulation Of Translation
Regulation Of MRNA Metabolic Process
MRNA Destabilization
RNA Destabilization
Negative Regulation Of Cell Migration
Negative Regulation Of Cell Motility
Negative Regulation Of Angiogenesis
Positive Regulation Of MRNA Catabolic Process
Negative Regulation Of Vasculature Development
Negative Regulation Of Locomotion
Positive Regulation Of MRNA Metabolic Process
Regulation Of Angiogenesis
Regulation Of Vasculature Development
Regulation Of RNA Stability
Regulation Of MRNA Stability
Negative Regulation Of Vascular Endothelial Growth Factor Production
Negative Regulation Of Cytokine Production
Negative Regulation Of Protein Metabolic Process
Negative Regulation Of Developmental Process
Negative Regulation Of Multicellular Organismal Process
Regulation Of Blood Vessel Endothelial Cell Migration
Regulation Of Sprouting Angiogenesis
MRNA Processing
Negative Regulation Of Signal Transduction
Regulation Of Cell Migration
Regulation Of Endothelial Cell Migration
Negative Regulation Of Transforming Growth Factor Beta Receptor Signaling Pathway
Regulation Of Locomotion
Regulation Of Cell Motility
RNA Binding
Nucleic Acid Binding
RNA Processing
RNA Metabolic Process
Nucleic Acid Metabolic Process
RNA Splicing
MRNA Processing
MRNA Metabolic Process
Nucleobase-containing Compound Metabolic Process
Macromolecule Metabolic Process
MRNA Binding
Regulation Of MRNA Metabolic Process
Regulation Of RNA Splicing
Ribonucleoprotein Complex
MRNA Splicing, Via Spliceosome
RNA Splicing, Via Transesterification Reactions
Post-transcriptional Regulation Of Gene Expression
Nucleoplasm
Nucleus
Regulation Of Translation
Aminoacyl-tRNA Synthetase Multienzyme Complex
Catalytic Step 2 Spliceosome
Regulation Of Gene Expression
Spliceosomal Complex
Regulation Of Macromolecule Biosynthetic Process
MRNA 3'-UTR Binding
Negative Regulation Of MRNA Metabolic Process
Regulation Of MRNA Processing
Regulation Of MRNA Splicing, Via Spliceosome
Regulation Of Macromolecule Metabolic Process
MiRNA Binding
TRNA Aminoacylation For Protein Translation
Aminoacyl-tRNA Ligase Activity
Regulation Of Metabolic Process
Negative Regulation Of Translation
TRNA Aminoacylation
Regulation Of Primary Metabolic Process
TRNA Metabolic Process
Regulation Of MRNA Stability
Cytoplasmic Stress Granule
Negative Regulation Of RNA Catabolic Process
Regulation Of RNA Stability
Negative Regulation Of MRNA Catabolic Process
RNA Stabilization
Negative Regulation Of Macromolecule Metabolic Process
MRNA Stabilization
Regulation Of Alternative MRNA Splicing, Via Spliceosome
Negative Regulation Of Metabolic Process
Positive Regulation Of Cytoplasmic Translation
Ligase Activity
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Tagcloud (Intersection)
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