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LSM8 and EXOSC10
Number of citations of the paper that reports this interaction (PMID
15231747
)
44
Data Source:
BioGRID
(two hybrid)
HPRD
(two hybrid)
LSM8
EXOSC10
Gene Name
LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae)
exosome component 10
Image
No pdb structure
Gene Ontology Annotations
Cellular Component
Spliceosomal Complex
U4/U6 X U5 Tri-snRNP Complex
Nuclear Exosome (RNase Complex)
Exosome (RNase Complex)
Nucleus
Nucleoplasm
Nucleolus
Cytoplasm
Membrane
Transcriptionally Active Chromatin
Molecular Function
Protein Binding
U6 SnRNA Binding
U6 SnRNA 3'-end Binding
Poly(A) RNA Binding
Nucleotide Binding
Exoribonuclease Activity
Protein Binding
3'-5' Exonuclease Activity
Poly(A) RNA Binding
Biological Process
MRNA Splicing, Via Spliceosome
Nuclear-transcribed MRNA Catabolic Process, Nonsense-mediated Decay
Maturation Of 5.8S RRNA
Nuclear-transcribed MRNA Catabolic Process
Dosage Compensation By Inactivation Of X Chromosome
Nuclear MRNA Surveillance
CUT Catabolic Process
Nuclear Polyadenylation-dependent RRNA Catabolic Process
Histone MRNA Catabolic Process
Nuclear Retention Of Unspliced Pre-mRNA At The Site Of Transcription
RNA Phosphodiester Bond Hydrolysis, Exonucleolytic
Pathways
Drugs
Diseases
GWAS
Protein-Protein Interactions
49 interactors:
ARNT
BCKDK
COL23A1
DBF4
DCP1A
DCP1B
DPAGT1
ECHDC2
EFTUD2
EXOSC10
EXOSC6
FAM63A
FERMT3
GMPPA
GTF2I
HSPA9
IFNLR1
IGHMBP2
ISOC2
ITSN2
KCTD3
LSM2
LSM3
LSM4
LSM5
LSM6
LSM7
MGA
MPRIP
MRPL48
MTHFR
NAGK
NME4
PDCD2
PGD
PHF11
RBM5
RPL24
RSC1A1
RSL24D1
SEPT10
SEPT5
SMU1
SNRNP200
SNRPB
SNRPD1
TALDO1
THUMPD3
UPF1
35 interactors:
ALDH1B1
B9D1
CHPF
CIB1
DIS3
DXO
EIF3M
EXOSC4
EXOSC5
EXOSC6
EXOSC7
EXOSC8
FERMT3
FOXRED1
IMMT
LCAT
LSM2
LSM8
MPHOSPH6
MPP6
NOMO1
NOMO2
PTGES2
RPE
RUVBL2
SCRIB
SKIV2L
SSRP1
TARDBP
TOX4
UPF2
USP16
USP21
XRN1
XRN2
Entrez ID
51691
5394
HPRD ID
06288
16180
Ensembl ID
ENSG00000171824
Uniprot IDs
A4D0W0
O95777
Q01780
Q96G78
PDB IDs
2CPR
3SAF
3SAG
3SAH
Enriched GO Terms of Interacting Partners
?
Exonucleolytic Nuclear-transcribed MRNA Catabolic Process Involved In Deadenylation-dependent Decay
Nuclear-transcribed MRNA Catabolic Process, Exonucleolytic
Nuclear-transcribed MRNA Catabolic Process
MRNA Metabolic Process
MRNA Catabolic Process
Nuclear-transcribed MRNA Catabolic Process, Deadenylation-dependent Decay
RNA Catabolic Process
Nucleobase-containing Compound Metabolic Process
Aromatic Compound Catabolic Process
RNA Splicing
Heterocycle Metabolic Process
Cellular Aromatic Compound Metabolic Process
Cellular Nitrogen Compound Metabolic Process
Nitrogen Compound Metabolic Process
MRNA Processing
RNA Processing
Catabolic Process
Gene Expression
RNA Metabolic Process
MRNA Splicing, Via Spliceosome
RNA Splicing, Via Transesterification Reactions
Cellular Macromolecule Catabolic Process
Ribonucleoprotein Complex Biogenesis
Nuclear-transcribed MRNA Catabolic Process, Nonsense-mediated Decay
Cellular Metabolic Process
Histone MRNA Metabolic Process
Pentose Biosynthetic Process
Metabolic Process
Histone MRNA Catabolic Process
Dosage Compensation By Inactivation Of X Chromosome
Spliceosomal Complex Assembly
Dosage Compensation
Ribonucleoprotein Complex Assembly
Ribosome Biogenesis
Pentose-phosphate Shunt
Glyceraldehyde-3-phosphate Metabolic Process
Nucleobase-containing Small Molecule Metabolic Process
Glucose 6-phosphate Metabolic Process
RRNA Processing
NcRNA Metabolic Process
Starch Catabolic Process
Nuclear Retention Of Unspliced Pre-mRNA At The Site Of Transcription
Response To Type III Interferon
Dolichol Biosynthetic Process
NADP Metabolic Process
RRNA Metabolic Process
Spliceosomal SnRNP Assembly
Carbohydrate Biosynthetic Process
D-gluconate Metabolic Process
Response To Vitamin B2
Exonucleolytic Nuclear-transcribed MRNA Catabolic Process Involved In Deadenylation-dependent Decay
Nuclear-transcribed MRNA Catabolic Process, Exonucleolytic
RNA Catabolic Process
Nuclear-transcribed MRNA Catabolic Process, Deadenylation-dependent Decay
Nuclear-transcribed MRNA Catabolic Process
MRNA Catabolic Process
MRNA Metabolic Process
RRNA Metabolic Process
RRNA Processing
Aromatic Compound Catabolic Process
Cellular Macromolecule Catabolic Process
Ribosome Biogenesis
Ribonucleoprotein Complex Biogenesis
RNA Phosphodiester Bond Hydrolysis, Exonucleolytic
Catabolic Process
RNA Metabolic Process
NcRNA Metabolic Process
Nitrogen Compound Metabolic Process
Cellular Nitrogen Compound Metabolic Process
Nucleobase-containing Compound Metabolic Process
Nuclear MRNA Surveillance
Heterocycle Metabolic Process
Cellular Aromatic Compound Metabolic Process
DNA Deamination
RNA Surveillance
Nucleic Acid Phosphodiester Bond Hydrolysis
RNA Phosphodiester Bond Hydrolysis
Gene Expression
Maturation Of 5.8S RRNA
Histone MRNA Catabolic Process
RRNA Catabolic Process
Cellular Metabolic Process
DNA Modification
Protein K63-linked Deubiquitination
Histone Deubiquitination
Histone MRNA Metabolic Process
DNA Metabolic Process
Chromatin Modification
Regulation Of Cell Adhesion Mediated By Integrin
Positive Regulation Of Male Germ Cell Proliferation
Metabolic Process
Chromatin Remodeling
MRNA Processing
Regulation Of RNA Stability
Chromatin Organization
Thrombopoietin-mediated Signaling Pathway
Posttranscriptional Regulation Of Gene Expression
Histone H2A K63-linked Deubiquitination
Regulation Of Male Germ Cell Proliferation
Endomitotic Cell Cycle
Tagcloud
?
18s
adopt
assumed
candidates
carry
defects
exosome
extensively
functionally
fundamental
hela
homolog
its2
itss
nucleolar
polycistronic
posing
precede
precursors
processing
recruit
ribosomopathies
rnas
rrna
rrnas
rrp6
spacers
transcribed
yeast
Tagcloud (Difference)
?
18s
adopt
assumed
candidates
carry
defects
exosome
extensively
functionally
fundamental
hela
homolog
its2
itss
nucleolar
polycistronic
posing
precede
precursors
processing
recruit
ribosomopathies
rnas
rrna
rrnas
rrp6
spacers
transcribed
yeast
Tagcloud (Intersection)
?