MIB1 and WRN

Number of citations: 0 (PubMedID 32652764)
Data Source: BioGRID (enzymatic study)

		MIB1	WRN
Name		MIB E3 ubiquitin protein ligase 1	WRN RecQ like helicase
Structure
GO Annotations	Cellular Component	Cytoplasm Centrosome Cytosol Cytoskeleton Plasma Membrane Postsynaptic Density Membrane Cytoplasmic Vesicle Centriolar Satellite Glutamatergic Synapse	Chromosome, Telomeric Region Nucleus Nucleoplasm Replication Fork Chromosome Nucleolus Cytoplasm Centrosome Nuclear Speck
	Molecular Function	Ubiquitin-protein Transferase Activity Protein Binding Zinc Ion Binding Transferase Activity Metal Ion Binding Ubiquitin Protein Ligase Activity	Nucleotide Binding Magnesium Ion Binding Four-way Junction DNA Binding Y-form DNA Binding Bubble DNA Binding Nucleic Acid Binding DNA Binding DNA Helicase Activity Catalytic Activity Helicase Activity Nuclease Activity Exonuclease Activity Protein Binding ATP Binding 3'-5' Exonuclease Activity Four-way Junction Helicase Activity Hydrolase Activity Isomerase Activity ATP Hydrolysis Activity Manganese Ion Binding MutLalpha Complex Binding Protein Homodimerization Activity 3'-5' DNA Helicase Activity Protein-containing Complex Binding Metal Ion Binding G-quadruplex DNA Binding Forked DNA-dependent Helicase Activity Telomeric D-loop Binding Telomeric G-quadruplex DNA Binding 3'-flap-structured DNA Binding Catalytic Activity, Acting On DNA 8-hydroxy-2'-deoxyguanosine DNA Binding
	Biological Process	Blood Vessel Development In Utero Embryonic Development Somitogenesis Neural Tube Formation Heart Looping Ubiquitin-dependent Protein Catabolic Process Endocytosis Notch Signaling Pathway Heart Development Protein Ubiquitination Central Nervous System Neuron Differentiation Negative Regulation Of Neuron Differentiation Positive Regulation Of Endocytosis	Telomere Maintenance Double-strand Break Repair Via Homologous Recombination DNA Synthesis Involved In DNA Repair Nucleobase-containing Compound Metabolic Process DNA Metabolic Process DNA Replication DNA Repair Base-excision Repair Mismatch Repair Double-strand Break Repair DNA Recombination DNA Damage Response Response To Oxidative Stress Determination Of Adult Lifespan Cellular Response To Starvation Response To UV-C Replication Fork Processing Telomere Maintenance Via Semi-conservative Replication DNA Geometric Change Regulation Of Growth Rate Positive Regulation Of Hydrolase Activity Telomeric D-loop Disassembly Cellular Response To Gamma Radiation Cellular Senescence Replicative Senescence T-circle Formation Positive Regulation Of Strand Invasion Protein Localization To Nucleolus
Pathways		Activated NOTCH1 Transmits Signal to the Nucleus Constitutive Signaling by NOTCH1 PEST Domain Mutants Constitutive Signaling by NOTCH1 HD Domain Mutants Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants NOTCH2 Activation and Transmission of Signal to the Nucleus NOTCH3 Activation and Transmission of Signal to the Nucleus	Processive synthesis on the C-strand of the telomere Removal of the Flap Intermediate from the C-strand SUMOylation of DNA damage response and repair proteins HDR through Single Strand Annealing (SSA) HDR through Homologous Recombination (HRR) Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA) Resolution of D-loop Structures through Holliday Junction Intermediates Homologous DNA Pairing and Strand Exchange Processing of DNA double-strand break ends Presynaptic phase of homologous DNA pairing and strand exchange Regulation of TP53 Activity through Phosphorylation G2/M DNA damage checkpoint Defective homologous recombination repair (HRR) due to BRCA1 loss of function Defective HDR through Homologous Recombination Repair (HRR) due to PALB2 loss of BRCA1 binding function Defective HDR through Homologous Recombination Repair (HRR) due to PALB2 loss of BRCA2/RAD51/RAD51C binding function Impaired BRCA2 binding to RAD51 Impaired BRCA2 binding to PALB2
Diseases		None	Defects in RecQ helicases, including: Bloom's syndrome; Werner's syndrome; Rothmund-Thomson syndrome
GWAS		Brain morphology (MOSTest) ( 32665545 ) Mean spheric corpuscular volume ( 32888494 ) Myocardial infarction ( 33532862 ) Severe progression in rheumatoid arthritis ( 29065906 )	Chronotype ( 30696823 ) Cough in response to angiotensin-converting enzyme inhibitor drugs ( 28084903 ) Daytime sleep phenotypes ( 27126917 ) Exercise treadmill test traits ( 17903301 ) Fasting glucose change (long-term) ( 31263163 ) Heel bone mineral density x serum urate levels interaction ( 34046847 ) Intelligence (MTAG) ( 29326435 ) Lifespan ( 25918517 ) Logical memory (delayed recall) in mild cognitive impairment ( 29274321 ) Logical memory (immediate recall) in mild cognitive impairment ( 29274321 ) Metabolite levels ( 23823483 ) Morning person ( 30696823 )
Novel Interactors		3 novel interactors: CABLES1 CHST9 RMC1	4 novel interactors: ADRB3 HTR5A LINC03042 UBXN8
Interacting Genes		17 interacting genes: AZI2 BLM DAB2 DAPK1 EPB41L4A GABARAP JAG1 RIPK4 SNX5 UBE2D1 UBE2D2 UBE2D3 UBE2D4 UBE2N UBE2U UBE2W WRN	34 interacting genes: ATM ATRX BARD1 BLM BRCA1 CDKN2A FEN1 H2AX MDC1 MDM2 MIB1 PARP1 PCNA POLB POLD2 POLK POLR1C PRKAR1B PRKDC RAD1 RAD51 RAD52 RAD54B RAD9A RPA1 RPA2 SUMO1 SUMO2 TERF2 TP53 VCP WRNIP1 XRCC5 XRCC6
Entrez ID		57534	7486
HPRD ID		06660	05212
Ensembl ID		ENSG00000101752	ENSG00000165392
Uniprot IDs		Q86YT6	Q14191
PDB IDs		4TSE 4XI6 4XI7 4XIB 8V0D 8V0E	2AXL 2DGZ 2E1E 2E1F 2FBT 2FBV 2FBX 2FBY 2FC0 3AAF 6TYV 6YHR 7GQS 7GQT 7GQU 7XUT 8PFL 8PFO 8PFP 8YLE
GO Terms Enriched among Interactors		Ubiquitin Conjugating Enzyme Activity Protein Polyubiquitination ATP Binding Ubiquitin-protein Transferase Activity Nucleotide Binding Forked DNA-dependent Helicase Activity Positive Regulation Of Protein Polyubiquitination Modification-dependent Protein Catabolic Process Ubiquitin-dependent Protein Catabolic Process 8-hydroxy-2'-deoxyguanosine DNA Binding Telomeric G-quadruplex DNA Binding Protein Ubiquitination Regulation Of Protein Polyubiquitination Telomeric D-loop Binding Y-form DNA Binding Transferase Activity Protein K48-linked Ubiquitination Proteolysis Involved In Protein Catabolic Process Protein Modification By Small Protein Conjugation Cellular Response To Nutrient Levels Macromolecule Catabolic Process Protein K11-linked Ubiquitination DNA Repair Four-way Junction Helicase Activity Catabolic Process Telomere Maintenance Via Semi-conservative Replication Post-translational Protein Modification DNA Geometric Change Bubble DNA Binding Protein Monoubiquitination Telomeric D-loop Disassembly G-quadruplex DNA Binding Protein Catabolic Process TORC1 Signaling Negative Regulation Of TORC1 Signaling Proteasome-mediated Ubiquitin-dependent Protein Catabolic Process Telomeric Loop Disassembly T-circle Formation 3'-5' DNA Helicase Activity TOR Signaling DNA Metabolic Process Negative Regulation Of TOR Signaling Four-way Junction DNA Binding Proteasomal Protein Catabolic Process DNA Conformation Change Response To Nutrient Levels Regulation Of TORC1 Signaling DNA Damage Response Cellular Response To Stress Positive Regulation Of Protein Ubiquitination	DNA Repair DNA Damage Response DNA Metabolic Process Cellular Response To Stress Response To Ionizing Radiation Double-strand Break Repair Nucleic Acid Metabolic Process Damaged DNA Binding Chromosome, Telomeric Region Response To Radiation DNA Recombination Recombinational Repair Cellular Response To Radiation Nucleobase-containing Compound Metabolic Process Response To Stress Telomere Maintenance Cellular Response To Ionizing Radiation Telomere Organization Regulation Of DNA Metabolic Process Double-strand Break Repair Via Homologous Recombination Signal Transduction In Response To DNA Damage Response To Gamma Radiation Macromolecule Metabolic Process Regulation Of Cellular Response To Stress Chromosome Organization Negative Regulation Of Cell Cycle DNA Damage Checkpoint Signaling Negative Regulation Of Cell Cycle Process Protein Localization To Chromosome Nucleoplasm Regulation Of Cell Cycle Process Regulation Of DNA Repair DNA Binding Regulation Of Cell Cycle Phase Transition DNA Biosynthetic Process Site Of Double-strand Break Enzyme Binding Negative Regulation Of Cell Cycle Phase Transition Mitotic DNA Damage Checkpoint Signaling Mitotic DNA Integrity Checkpoint Signaling Nuclear Body Regulation Of Cell Cycle DNA Replication Cellular Response To Gamma Radiation Protein Localization To Organelle PML Body Replication Fork Processing Protein-containing Complex Regulation Of DNA Recombination Negative Regulation Of Mitotic Cell Cycle