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SRSF3 and EXOSC6
Number of citations of the paper that reports this interaction (PubMedID
15231747
)
47
Data Source:
HPRD
(two hybrid)
SRSF3
EXOSC6
Description
serine and arginine rich splicing factor 3
exosome component 6
Image
GO Annotations
Cellular Component
Nucleus
Nucleoplasm
Cytoplasm
Nuclear Speck
Nuclear Exosome (RNase Complex)
Cytoplasmic Exosome (RNase Complex)
Exosome (RNase Complex)
Nucleus
Nucleoplasm
Nucleolus
Cytoplasm
Cytosol
Nucleolar Exosome (RNase Complex)
Molecular Function
Nucleic Acid Binding
RNA Binding
MRNA Binding
Protein Binding
Pre-mRNA Binding
Phospholipase Binding
Primary MiRNA Binding
Protein-RNA Sequence-specific Adaptor Activity
Sequence-specific MRNA Binding
RNA Binding
RNA Exonuclease Activity
Biological Process
Regulation Of Alternative MRNA Splicing, Via Spliceosome
RNA Processing
MRNA Processing
MRNA Export From Nucleus
RNA Splicing
Primary MiRNA Processing
Regulation Of MRNA Splicing, Via Spliceosome
MRNA Transport
Cellular Response To Leukemia Inhibitory Factor
DNA Metabolic Process
RRNA Processing
RNA Processing
RNA Catabolic Process
RRNA Catabolic Process
U4 SnRNA 3'-end Processing
DNA Deamination
Isotype Switching
Positive Regulation Of Isotype Switching
Nuclear MRNA Surveillance
Poly(A)-dependent SnoRNA 3'-end Processing
Pathways
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA Splicing - Major Pathway
mRNA 3'-end processing
Processing of Capped Intron-Containing Pre-mRNA
RNA Polymerase II Transcription Termination
ATF4 activates genes in response to endoplasmic reticulum stress
mRNA decay by 3' to 5' exoribonuclease
Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA
Tristetraprolin (TTP, ZFP36) binds and destabilizes mRNA
KSRP (KHSRP) binds and destabilizes mRNA
Major pathway of rRNA processing in the nucleolus and cytosol
Nuclear RNA decay
Drugs
Diseases
GWAS
Glaucoma (primary open-angle) (
33627673
)
Mean corpuscular volume (
32888494
)
Mean reticulocyte volume (
32888494
)
Mean spheric corpuscular volume (
32888494
)
Vertical cup-disc ratio (adjusted for vertical disc diameter) (
31959993
)
Vertical cup-disc ratio (multi-trait analysis) (
31959993
)
Brain morphology (MOSTest) (
32665545
)
Malaria (
31844061
)
Interacting Genes
40 interacting genes:
-
APP
BCL2L13
CHD1
CIRBP
CLK3
CNNM3
DUX4
EXOSC6
FOXP1
GEMIN2
HMGB1
HNRNPK
IL7R
LNX1
NXF1
PCBP1
PCBP2
PCBP3
PCDHB14
PRPF31
RBM3
RBM7
RBMY1A1
RNF10
RNPS1
RPL9
SCAF11
SDCBP
SREK1
SRPK1
SRPK2
SRSF2
SRSF8
TRA2B
U2AF1
U2AF2
YWHAB
YWHAG
YWHAQ
34 interacting genes:
C1QBP
CHPF
DCP1B
DIS3
DNAJC30
EIF3I
ESRRA
EXOSC10
EXOSC2
EXOSC4
EXOSC5
EXOSC7
EXOSC8
EXOSC9
GSE1
LSM1
LSM7
LSM8
MAN2C1
MIF4GD
MOCS3
MRPL4
MRPS18B
MTREX
NDUFA13
NUDT21
PALS2
PSMB1
RAB3GAP2
SRSF3
TUFM
UPF2
XRN1
ZFP36
Entrez ID
6428
118460
HPRD ID
04530
12107
Ensembl ID
ENSG00000112081
ENSG00000223496
Uniprot IDs
B2R6F3
P84103
Q5RKV6
PDB IDs
2I2Y
2I38
9ASQ
2NN6
6D6Q
6D6R
6H25
9G8N
9G8O
9G8P
Enriched GO Terms of Interacting Partners
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Regulation Of MRNA Splicing, Via Spliceosome
RNA Binding
Regulation Of RNA Splicing
Regulation Of MRNA Processing
MRNA Metabolic Process
RNA Splicing
Nucleic Acid Binding
MRNA Processing
RNA Metabolic Process
Regulation Of MRNA Metabolic Process
Spliceosomal Complex
RNA Processing
Nucleus
Nuclear Speck
Nucleoplasm
Nucleic Acid Metabolic Process
MRNA Binding
Regulation Of Alternative MRNA Splicing, Via Spliceosome
RNA Splicing, Via Transesterification Reactions
Nucleobase-containing Compound Metabolic Process
Regulation Of Nucleobase-containing Compound Metabolic Process
Positive Regulation Of RNA Splicing
Spliceosomal Complex Assembly
Regulation Of Gene Expression
Regulation Of RNA Metabolic Process
Regulation Of Macromolecule Biosynthetic Process
Macromolecule Metabolic Process
Regulation Of Primary Metabolic Process
Viral RNA Genome Replication
Positive Regulation Of MRNA Splicing, Via Spliceosome
Regulation Of Macromolecule Metabolic Process
Protein-RNA Complex Assembly
MRNA Splicing, Via Spliceosome
Positive Regulation Of Gene Expression
Viral Genome Replication
Negative Regulation Of MRNA Splicing, Via Spliceosome
Positive Regulation Of Macromolecule Biosynthetic Process
Regulation Of Metabolic Process
Negative Regulation Of RNA Splicing
Positive Regulation Of Biosynthetic Process
Focal Adhesion
Negative Regulation Of RNA Metabolic Process
14-3-3 Protein Binding
Pre-mRNA 3'-splice Site Binding
U2AF Complex
Negative Regulation Of MRNA Metabolic Process
Negative Regulation Of Nucleobase-containing Compound Metabolic Process
Protein Sequestering Activity
Protein Domain Specific Binding
Ribonucleoprotein Complex
Exosome (RNase Complex)
RNA Catabolic Process
Nuclear-transcribed MRNA Catabolic Process
MRNA Catabolic Process
Nuclear Exosome (RNase Complex)
Nuclear MRNA Surveillance
MRNA Metabolic Process
Cytoplasmic Exosome (RNase Complex)
Nucleobase-containing Compound Catabolic Process
Nucleolar Exosome (RNase Complex)
Nuclear RNA Surveillance
RNA Surveillance
RNA Exonuclease Activity
RRNA Catabolic Process
U4 SnRNA 3'-end Processing
RNA Binding
RNA Metabolic Process
SnRNA Metabolic Process
3'-5'-RNA Exonuclease Activity
Exoribonuclease Complex
Exonucleolytic Trimming To Generate Mature 3'-end Of 5.8S RRNA From Tricistronic RRNA Transcript (SSU-rRNA, 5.8S RRNA, LSU-rRNA)
TRNA Surveillance
TRAMP-dependent TRNA Surveillance Pathway
Nuclear Polyadenylation-dependent RRNA Catabolic Process
RNA Processing
Macromolecule Catabolic Process
SnRNA 3'-end Processing
RNA 3'-end Processing
RRNA 3'-end Processing
TRNA Decay
MRNA 3'-UTR AU-rich Region Binding
RRNA Metabolic Process
SnRNA Processing
Nucleobase-containing Compound Metabolic Process
Nucleic Acid Metabolic Process
RRNA Processing
Catabolic Process
Macromolecule Metabolic Process
Poly(A)-dependent SnoRNA 3'-end Processing
Negative Regulation Of Gene Expression
U5 SnRNA 3'-end Processing
U1 SnRNA 3'-end Processing
Histone MRNA Catabolic Process
Sno(s)RNA Metabolic Process
CUT Catabolic Process
Histone MRNA Metabolic Process
Negative Regulation Of Macromolecule Biosynthetic Process
Negative Regulation Of Biosynthetic Process
MRNA Binding
Nucleolus
Tagcloud
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Tagcloud (Difference)
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Tagcloud (Intersection)
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