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LSM2 and ZNF408
Number of citations of the paper that reports this interaction (PubMedID
15231747
)
47
Data Source:
HPRD
(two hybrid)
LSM2
ZNF408
Description
LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated
zinc finger protein 408
Image
No pdb structure
GO Annotations
Cellular Component
P-body
Nucleus
Nucleoplasm
Spliceosomal Complex
U6 SnRNP
Cytoplasm
Cytosol
U4/U6 X U5 Tri-snRNP Complex
U2-type Precatalytic Spliceosome
Precatalytic Spliceosome
Catalytic Step 2 Spliceosome
Lsm2-8 Complex
Lsm1-7-Pat1 Complex
Ribonucleoprotein Complex
Nucleus
Molecular Function
RNA Binding
Protein Binding
U6 SnRNA Binding
Small GTPase Binding
RNA Polymerase II Cis-regulatory Region Sequence-specific DNA Binding
DNA-binding Transcription Factor Activity, RNA Polymerase II-specific
DNA Binding
Protein Binding
Zinc Ion Binding
Identical Protein Binding
Metal Ion Binding
Biological Process
Spliceosomal Tri-snRNP Complex Assembly
MRNA Splicing, Via Spliceosome
MRNA Processing
MRNA Catabolic Process
RNA Splicing
Regulation Of Transcription By RNA Polymerase II
Pathways
mRNA decay by 5' to 3' exoribonuclease
mRNA decay by 5' to 3' exoribonuclease
mRNA Splicing - Major Pathway
Drugs
Diseases
GWAS
Asthma (
31619474
)
Asthma (childhood onset) (
31619474
)
Asthma and major depressive disorder (
31619474
)
Autism spectrum disorder or schizophrenia (
28540026
)
Inflammatory bowel disease (
28067908
)
Rosacea symptom severity (
29771307
)
Ulcerative colitis (
28067908
)
Alzheimer's disease or fasting glucose levels (pleiotropy) (
30805717
)
Autism spectrum disorder or schizophrenia (
28540026
)
Femoral neck bone mineral density (
29499414
)
Schizophrenia (
29483656
)
Interacting Genes
39 interacting genes:
BANP
CBX8
CEBPA
CRMP1
DNAAF11
DNAJA1
ERG28
EXOSC10
GBP2
KRT13
LGALS7
LGALS7B
LNX1
LSM1
LSM12
LSM3
LSM5
LSM6
LSM7
LSM8
LZTS1
MAGEA3
MAGEA6
MEOX2
PATL1
PCM1
PNMA1
RALA
REL
RSRC1
SF3B2
SMN1
SNRPD2
SNRPE
TEX11
TLE5
TRIM54
ZBTB16
ZNF408
83 interacting genes:
AEBP2
AEN
APOBEC3C
ATRN
BAHD1
CALCOCO2
CCDC136
CEP70
CHAF1A
CRELD1
CYSRT1
DDX56
DVL3
EXOSC2
FBLN2
FHL2
FHL5
FSD2
GIPC1
GPATCH2L
HNRNPK
HOXA5
HOXB9
ID3
KCTD9
KHDRBS3
KRT40
KRTAP1-1
KRTAP10-7
KRTAP10-8
KRTAP12-2
KRTAP12-3
KRTAP4-12
KRTAP5-9
LDOC1
LSM2
LZTS2
MDFI
MID2
MIF
MRRF
MTUS2
NBPF19
NOTCH2NLA
PDE4DIP
PDLIM4
PICK1
PNMA2
PRAME
PRNP
PRPF31
PSTPIP1
RALY
RALYL
RBM10
RBMY1F
RBMY1J
SAP30BP
SPRED1
SSX2IP
THAP1
TLE5
TOP3B
TRIM23
TRIM41
UBE2I
UPF2
USP20
ZBTB26
ZBTB48
ZBTB8A
ZBTB9
ZC4H2
ZNF212
ZNF317
ZNF330
ZNF331
ZNF473
ZNF526
ZNF764
ZNF792
ZNF837
ZRANB1
Entrez ID
57819
79797
HPRD ID
06282
18338
Ensembl ID
ENSG00000204392
ENSG00000175213
Uniprot IDs
Q9Y333
B4DXY4
Q9H9D4
PDB IDs
3JCR
5O9Z
6AH0
6AHD
6QW6
6QX9
7ABG
8H6E
8H6J
8H6K
8H6L
8QO9
8QXD
8QZS
8R08
8R09
8R0A
8R0B
8RM5
Enriched GO Terms of Interacting Partners
?
U2-type Precatalytic Spliceosome
RNA Splicing, Via Transesterification Reactions
Lsm2-8 Complex
U4/U6 X U5 Tri-snRNP Complex
U6 SnRNP
Lsm1-7-Pat1 Complex
RNA Splicing
MRNA Metabolic Process
MRNA Splicing, Via Spliceosome
Precatalytic Spliceosome
MRNA Processing
Spliceosomal Complex
RNA Processing
U12-type Spliceosomal Complex
MRNA Catabolic Process
RNA Metabolic Process
Catalytic Step 2 Spliceosome
Ribonucleoprotein Complex
RNA Binding
Spliceosomal Complex Assembly
RNA Catabolic Process
Small Nuclear Ribonucleoprotein Complex
SMN-Sm Protein Complex
Nucleus
Nucleic Acid Metabolic Process
U2-type Prespliceosome Assembly
U2 SnRNP
U2-type Spliceosomal Complex
Nucleobase-containing Compound Metabolic Process
P-body
PICln-Sm Protein Complex
Nuclear-transcribed MRNA Catabolic Process
Nucleobase-containing Compound Catabolic Process
Spliceosomal SnRNP Assembly
7-methylguanosine Cap Hypermethylation
U4 SnRNP
Methylosome
Nuclear Speck
Deadenylation-dependent Decapping Of Nuclear-transcribed MRNA
U6 SnRNA Binding
Histone MRNA Catabolic Process
P-body Assembly
Negative Regulation Of Metabolic Process
MRNA Methylguanosine-cap Decapping
Negative Regulation Of Macromolecule Biosynthetic Process
Negative Regulation Of Gene Expression
U1 SnRNP
U5 SnRNP
RNA Decapping
Protein Binding
Identical Protein Binding
Nucleus
Protein Binding
Zinc Ion Binding
Intermediate Filament
Regulation Of RNA Metabolic Process
Regulation Of RNA Biosynthetic Process
Keratin Filament
Regulation Of Nucleobase-containing Compound Metabolic Process
Regulation Of DNA-templated Transcription
Regulation Of Gene Expression
Regulation Of Transcription By RNA Polymerase II
Regulation Of Macromolecule Biosynthetic Process
Negative Regulation Of RNA Biosynthetic Process
Negative Regulation Of RNA Metabolic Process
Negative Regulation Of DNA-templated Transcription
MRNA Metabolic Process
Regulation Of MRNA Splicing, Via Spliceosome
Negative Regulation Of Transcription By RNA Polymerase II
Negative Regulation Of Macromolecule Biosynthetic Process
Spliceosomal Complex
MRNA Processing
Regulation Of Metabolic Process
Negative Regulation Of Nucleobase-containing Compound Metabolic Process
Regulation Of Macromolecule Metabolic Process
Negative Regulation Of Biosynthetic Process
Regulation Of MRNA Processing
Regulation Of Primary Metabolic Process
RNA Processing
Negative Regulation Of Macromolecule Metabolic Process
Cellular Response To Muramyl Dipeptide
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