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LSM7 and LSM1
Number of citations of the paper that reports this interaction (PubMedID
11920408
)
0
Data Source:
HPRD
(in vitro)
LSM7
LSM1
Description
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated
LSM1 homolog, mRNA degradation associated
Image
No pdb structure
GO Annotations
Cellular Component
Nucleus
Nucleoplasm
Spliceosomal Complex
U6 SnRNP
U12-type Spliceosomal Complex
Cytosol
U4/U6 X U5 Tri-snRNP Complex
U2-type Prespliceosome
U2-type Precatalytic Spliceosome
Catalytic Step 2 Spliceosome
Spliceosomal Tri-snRNP Complex
Lsm2-8 Complex
Lsm1-7-Pat1 Complex
Ribonucleoprotein Complex
P-body
Nucleus
Cytoplasm
Cytosol
Lsm1-7-Pat1 Complex
Ribonucleoprotein Complex
Molecular Function
RNA Binding
Protein Binding
U6 SnRNA Binding
RNA Binding
MRNA Binding
Protein Binding
Biological Process
MRNA Splicing, Via Spliceosome
Nuclear-transcribed MRNA Catabolic Process
MRNA Processing
RNA Splicing
Deadenylation-dependent Decapping Of Nuclear-transcribed MRNA
RNA Splicing, Via Transesterification Reactions
Nuclear-transcribed MRNA Catabolic Process
MRNA Processing
RNA Splicing
Stem Cell Population Maintenance
Neuron Differentiation
Negative Regulation Of Neuron Differentiation
Histone MRNA Catabolic Process
Pathways
mRNA decay by 5' to 3' exoribonuclease
mRNA decay by 5' to 3' exoribonuclease
mRNA Splicing - Major Pathway
mRNA decay by 5' to 3' exoribonuclease
mRNA decay by 5' to 3' exoribonuclease
Drugs
Diseases
GWAS
Parkinson's disease (
28892059
)
Autism spectrum disorder or schizophrenia (
28540026
)
Schizophrenia (
22037555
28991256
29483656
)
Interacting Genes
24 interacting genes:
CEBPA
DDIT4L
EPHA2
EXOSC6
EXOSC8
LDB1
LSM1
LSM2
LSM3
LSM5
LSM6
LSM8
MYH13
NPY1R
PFKM
RAB29
RASSF5
SMN1
SNRPD3
SNRPF
SYT17
TACC1
TCL1B
ZSCAN26
32 interacting genes:
AGR2
AGR3
BEX5
CLIC1
DAPL1
EXOSC6
EXOSC8
GLUD1
GRHPR
GSTA4
HSP90AA1
LSM2
LSM3
LSM5
LSM6
LSM7
MCCD1
MPDU1
N4BP1
NARS1
NDUFAF3
PSMB5
PSMB8
PTPRC
RRP1B
SMN1
TCL1B
TFCP2
TMEM214
UPF2
UXT
VPS11
Entrez ID
51690
27257
HPRD ID
06287
06281
Ensembl ID
ENSG00000130332
ENSG00000175324
Uniprot IDs
Q9UK45
A0A0S2Z590
O15116
PDB IDs
3JCR
5O9Z
6AH0
6AHD
6QW6
6QX9
7ABG
8H6E
8H6J
8H6K
8H6L
8QO9
8QXD
8QZS
8R08
8R09
8R0A
8R0B
8RM5
Enriched GO Terms of Interacting Partners
?
U4/U6 X U5 Tri-snRNP Complex
Lsm2-8 Complex
U2-type Precatalytic Spliceosome
U6 SnRNP
RNA Splicing, Via Transesterification Reactions
Lsm1-7-Pat1 Complex
MRNA Metabolic Process
RNA Splicing
MRNA Processing
Spliceosomal Complex
RNA Processing
MRNA Splicing, Via Spliceosome
RNA Metabolic Process
Precatalytic Spliceosome
MRNA Catabolic Process
Ribonucleoprotein Complex
Nucleobase-containing Compound Metabolic Process
RNA Catabolic Process
Spliceosomal SnRNP Assembly
Nucleobase-containing Compound Catabolic Process
Nucleic Acid Metabolic Process
Small Nuclear Ribonucleoprotein Complex
SMN-Sm Protein Complex
RNA Binding
Catalytic Step 2 Spliceosome
P-body
PICln-Sm Protein Complex
Spliceosomal Complex Assembly
U7 SnRNP
7-methylguanosine Cap Hypermethylation
U4 SnRNA 3'-end Processing
Nucleolar Exosome (RNase Complex)
U4 SnRNP
Nuclear MRNA Surveillance
Methylosome
U6 SnRNA Binding
Protein-RNA Complex Assembly
Cytoplasmic Exosome (RNase Complex)
RNA Exonuclease Activity
RRNA Catabolic Process
Nuclear Exosome (RNase Complex)
Exosome (RNase Complex)
U1 SnRNP
Nucleoplasm
U5 SnRNP
SnRNA 3'-end Processing
Nuclear-transcribed MRNA Catabolic Process
Macromolecule Catabolic Process
U2-type Prespliceosome Assembly
U12-type Spliceosomal Complex
Lsm2-8 Complex
U6 SnRNP
Lsm1-7-Pat1 Complex
MRNA Catabolic Process
MRNA Metabolic Process
U4/U6 X U5 Tri-snRNP Complex
U2-type Precatalytic Spliceosome
RNA Catabolic Process
RNA Splicing, Via Transesterification Reactions
Nucleobase-containing Compound Catabolic Process
RNA Splicing
RNA Metabolic Process
RNA Binding
MRNA Processing
Macromolecule Catabolic Process
Spliceosomal Complex
RNA Processing
Negative Regulation Of Gene Expression
MRNA Splicing, Via Spliceosome
Nuclear-transcribed MRNA Catabolic Process
Nucleic Acid Metabolic Process
U4 SnRNA 3'-end Processing
Threonine-type Endopeptidase Activity
Dystroglycan Binding
Nucleolar Exosome (RNase Complex)
Catabolic Process
Proteasome Core Complex, Beta-subunit Complex
Nuclear MRNA Surveillance
U6 SnRNA Binding
Cytoplasmic Exosome (RNase Complex)
RNA Exonuclease Activity
RRNA Catabolic Process
Nuclear Exosome (RNase Complex)
Exosome (RNase Complex)
Macromolecule Metabolic Process
Precatalytic Spliceosome
Catalytic Step 2 Spliceosome
Proteasome Core Complex
Nucleobase-containing Compound Metabolic Process
RRNA Processing
Ribonucleoprotein Complex
SnRNA 3'-end Processing
P-body
RRNA Metabolic Process
Positive Regulation Of Isotype Switching
CTP Binding
DATP Binding
Protein Folding Chaperone Complex
Plasma Membrane Raft Distribution
Hydroxypyruvate Reductase [NAD(P)H] Activity
Tagcloud
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Tagcloud (Difference)
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Tagcloud (Intersection)
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