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SNRPF and DDX20
Number of citations of the paper that reports this interaction (PubMedID
10601333
)
63
Data Source:
HPRD
(in vivo, in vitro)
SNRPF
DDX20
Description
small nuclear ribonucleoprotein polypeptide F
DEAD-box helicase 20
Image
GO Annotations
Cellular Component
Nucleus
Nucleoplasm
Spliceosomal Complex
U5 SnRNP
U7 SnRNP
U2-type Spliceosomal Complex
U1 SnRNP
U2 SnRNP
U4 SnRNP
U12-type Spliceosomal Complex
Cytoplasm
Cytosol
Small Nuclear Ribonucleoprotein Complex
Methylosome
PICln-Sm Protein Complex
SMN-Sm Protein Complex
U4/U6 X U5 Tri-snRNP Complex
U2-type Precatalytic Spliceosome
U2-type Catalytic Step 2 Spliceosome
Catalytic Step 2 Spliceosome
Ribonucleoprotein Complex
Nucleus
Nucleoplasm
Cytoplasm
Cytosol
Cytoskeleton
Membrane
Nuclear Body
Transcription Repressor Complex
SMN Complex
Protein-containing Complex
SMN-Sm Protein Complex
RNA Polymerase II Transcription Repressor Complex
Gemini Of Cajal Bodies
Molecular Function
RNA Binding
Protein Binding
Nucleotide Binding
Nucleic Acid Binding
DNA Binding
RNA Helicase Activity
MRNA Binding
Helicase Activity
Protein Binding
ATP Binding
Hydrolase Activity
ATP Hydrolysis Activity
Ribonucleoside Triphosphate Phosphatase Activity
Protein Domain Specific Binding
Protein-macromolecule Adaptor Activity
Histone Deacetylase Binding
DNA-binding Transcription Factor Binding
Biological Process
Spliceosomal SnRNP Assembly
MRNA Splicing, Via Spliceosome
MRNA Processing
RNA Splicing
Protein-RNA Complex Assembly
7-methylguanosine Cap Hypermethylation
U2-type Prespliceosome Assembly
Negative Regulation Of Transcription By RNA Polymerase II
Spliceosomal Tri-snRNP Complex Assembly
Spliceosomal SnRNP Assembly
RNA Processing
MRNA Processing
Negative Regulation Of Cell Population Proliferation
RNA Splicing
Positive Regulation Of Apoptotic Process
Negative Regulation Of DNA-templated Transcription
Oogenesis
Regulation Of Steroid Biosynthetic Process
Pathways
SLBP independent Processing of Histone Pre-mRNAs
snRNP Assembly
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway
RNA Polymerase II Transcription Termination
SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs
SARS-CoV-2 modulates host translation machinery
snRNP Assembly
SARS-CoV-2 modulates host translation machinery
Drugs
Diseases
GWAS
Chronic obstructive pulmonary disease (
30804561
)
Lung function (FEV1/FVC) (
30804560
)
Peak expiratory flow (
30804560
)
Refractive error (
32231278
)
Vitamin C levels (
33203707
)
Body mass index (
29273807
)
Metabolite levels (
23823483
)
Venous thromboembolism (
32232851
)
Interacting Genes
30 interacting genes:
CEBPA
COIL
CPSF7
DDX20
FOXP1
GEMIN5
GEMIN6
HOMER3
HSPB1
IKZF1
IL7R
LNX1
LSM3
LSM5
LSM6
LSM7
MEOX2
OSBPL2
POLDIP3
PRPF6
PSMA3
PUF60
RPL9
SMN2
SNRPD2
SNRPE
SNRPG
SRRT
SRSF5
WDR77
33 interacting genes:
AGO2
APP
CFTR
CRYAB
DHX9
ETV3
GEMIN2
GEMIN4
GEMIN5
HDAC2
HDAC5
NCOR1
NCOR2
NR0B2
NUFIP1
PRRC2A
RN7SL1
RNU1-1
RNU2-1
SIN3A
SMN1
SMN2
SNRPB
SNRPD1
SNRPD2
SNRPD3
SNRPE
SNRPF
SNRPG
SNUPN
STXBP2
STXBP3
TP53
Entrez ID
6636
11218
HPRD ID
04645
05859
Ensembl ID
ENSG00000139343
ENSG00000064703
Uniprot IDs
P62306
Q9H4N4
Q9UHI6
PDB IDs
3CW1
3JCR
3PGW
4F7U
4PJO
4V98
4WZJ
5MQF
5O9Z
5XJC
5XJL
5XJQ
5XJR
5XJS
5XJT
5XJU
5YZG
5Z56
5Z57
5Z58
6AH0
6FF7
6ICZ
6ID0
6ID1
6QDV
6QW6
6QX9
6V4X
6Y53
6Y5Q
7A5P
7ABG
7ABI
7B0Y
7DVQ
7EVO
7QTT
7VPX
7W59
7W5A
7W5B
8C6J
8CH6
8H6E
8H6J
8H6K
8H6L
8HK1
8I0P
8I0R
8I0S
8I0T
8I0U
8I0V
8I0W
8Q7Q
8Q7V
8Q7W
8Q7X
8Q91
8QO9
8QXD
8QZS
8R08
8R09
8R0A
8R0B
8R7N
8RC0
8RM5
8RO2
8Y6O
8Y7E
9FMD
9GBW
9GC0
9GCL
2OXC
3B7G
Enriched GO Terms of Interacting Partners
?
Spliceosomal SnRNP Assembly
RNA Splicing, Via Transesterification Reactions
MRNA Processing
RNA Splicing
Protein-RNA Complex Assembly
SMN-Sm Protein Complex
U4/U6 X U5 Tri-snRNP Complex
MRNA Metabolic Process
U2-type Precatalytic Spliceosome
MRNA Splicing, Via Spliceosome
RNA Processing
RNA Binding
Nucleoplasm
Spliceosomal Complex Assembly
RNA Metabolic Process
Lsm2-8 Complex
Ribonucleoprotein Complex
Spliceosomal Complex
U6 SnRNP
SMN Complex
Gemini Of Cajal Bodies
Methylosome
Protein-containing Complex Assembly
Catalytic Step 2 Spliceosome
Nucleus
Small Nuclear Ribonucleoprotein Complex
Precatalytic Spliceosome
Protein-containing Complex Organization
U5 SnRNP
Lsm1-7-Pat1 Complex
Nucleic Acid Metabolic Process
U12-type Spliceosomal Complex
7-methylguanosine Cap Hypermethylation
U4 SnRNP
Nucleobase-containing Compound Metabolic Process
Cellular Component Assembly
U1 SnRNP
Macromolecule Metabolic Process
Cytosol
U2-type Prespliceosome Assembly
U2 SnRNP
U2-type Spliceosomal Complex
U2-type Catalytic Step 2 Spliceosome
Nuclear Body
PICln-Sm Protein Complex
Spliceosomal Tri-snRNP Complex
U7 SnRNP
Regulation Of Gene Expression
U1 SnRNA Binding
Regulation Of Macromolecule Biosynthetic Process
SMN-Sm Protein Complex
Spliceosomal SnRNP Assembly
Protein-RNA Complex Assembly
7-methylguanosine Cap Hypermethylation
Spliceosomal Complex Assembly
Small Nuclear Ribonucleoprotein Complex
U4 SnRNP
Methylosome
Protein-containing Complex Assembly
U2 SnRNP
Protein-containing Complex Organization
RNA Splicing, Via Transesterification Reactions
U1 SnRNP
U5 SnRNP
U2-type Prespliceosome Assembly
U12-type Spliceosomal Complex
RNA Splicing
U2-type Spliceosomal Complex
U2-type Catalytic Step 2 Spliceosome
PICln-Sm Protein Complex
U7 SnRNP
MRNA Processing
U4/U6 X U5 Tri-snRNP Complex
MRNA Metabolic Process
U2-type Precatalytic Spliceosome
Cellular Component Assembly
SMN Complex
RNA Processing
Gemini Of Cajal Bodies
Nucleoplasm
MRNA Splicing, Via Spliceosome
RNA Methylation
Precatalytic Spliceosome
Catalytic Step 2 Spliceosome
RNA Binding
Spliceosomal Complex
Macromolecule Methylation
RNA Metabolic Process
RNA Modification
Nucleus
Nuclear Body
Ribonucleoprotein Complex
Methylation
Protein-containing Complex
Spliceosomal Tri-snRNP Complex
Transcription Repressor Complex
Nucleic Acid Metabolic Process
Rhythmic Process
Cytosol
Histone Deacetylase Complex
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Tagcloud (Intersection)
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