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DDX20 and SMN2
Number of citations of the paper that reports this interaction (PubMedID
28514442
)
50
Data Source:
BioGRID
(affinity chromatography technology)
HPRD
(in vitro)
DDX20
SMN2
Description
DEAD-box helicase 20
survival of motor neuron 2, centromeric
Image
GO Annotations
Cellular Component
Nucleus
Nucleoplasm
Cytoplasm
Cytosol
Cytoskeleton
Membrane
Nuclear Body
Transcription Repressor Complex
SMN Complex
Protein-containing Complex
SMN-Sm Protein Complex
RNA Polymerase II Transcription Repressor Complex
Gemini Of Cajal Bodies
Nucleus
Nucleoplasm
Cytoplasm
Cytosol
Cajal Body
Nuclear Body
Z Disc
Axon
SMN Complex
SMN-Sm Protein Complex
Cytoplasmic Ribonucleoprotein Granule
Cell Projection
Neuron Projection
Perikaryon
Gemini Of Cajal Bodies
Molecular Function
Nucleotide Binding
Nucleic Acid Binding
DNA Binding
RNA Helicase Activity
MRNA Binding
Helicase Activity
Protein Binding
ATP Binding
Hydrolase Activity
ATP Hydrolysis Activity
Ribonucleoside Triphosphate Phosphatase Activity
Protein Domain Specific Binding
Protein-macromolecule Adaptor Activity
Histone Deacetylase Binding
DNA-binding Transcription Factor Binding
RNA Binding
Protein Binding
Identical Protein Binding
Biological Process
Negative Regulation Of Transcription By RNA Polymerase II
Spliceosomal Tri-snRNP Complex Assembly
Spliceosomal SnRNP Assembly
RNA Processing
MRNA Processing
Negative Regulation Of Cell Population Proliferation
RNA Splicing
Positive Regulation Of Apoptotic Process
Negative Regulation Of DNA-templated Transcription
Oogenesis
Regulation Of Steroid Biosynthetic Process
Spliceosomal Complex Assembly
RNA Splicing, Via Transesterification Reactions
Spliceosomal SnRNP Assembly
DNA-templated Transcription Termination
MRNA Processing
Nervous System Development
RNA Splicing
Pathways
snRNP Assembly
SARS-CoV-2 modulates host translation machinery
snRNP Assembly
SARS-CoV-2 modulates host translation machinery
Drugs
Nusinersen
Diseases
Spinal muscular atrophy (SMA), including: SMA type I (SMA1) / Werdning-Hoffman disease; SMA type II (SMA2); SMA type III (SMA3) / Kugeleberg-Welander disease; SMA type IV (SMA4); X-linked SMA 2 (SMAX2); X-linked distal SMA 3 (DSMAX); Distal SMA autosomal recessive type 4 (DSMA4); Congenital distal spinal muscular atrophy (SMAL); SMA proximal adult autosomal dominant (SMAPAD)
GWAS
Body mass index (
29273807
)
Metabolite levels (
23823483
)
Venous thromboembolism (
32232851
)
Interacting Genes
33 interacting genes:
AGO2
APP
CFTR
CRYAB
DHX9
ETV3
GEMIN2
GEMIN4
GEMIN5
HDAC2
HDAC5
NCOR1
NCOR2
NR0B2
NUFIP1
PRRC2A
RN7SL1
RNU1-1
RNU2-1
SIN3A
SMN1
SMN2
SNRPB
SNRPD1
SNRPD2
SNRPD3
SNRPE
SNRPF
SNRPG
SNUPN
STXBP2
STXBP3
TP53
37 interacting genes:
BLOC1S6
BYSL
CHTOP
DDX20
DHX9
EHHADH
FAM9B
FBL
FNDC11
GAR1
GEMIN2
HNRNPUL1
IQUB
KRTAP19-6
KRTAP19-7
KRTAP21-2
KRTAP6-1
KRTAP6-2
MAGED1
MBD2
POLR1C
POLR2A
PPIG
SMN1
SNRPB
SNRPB2
SNRPD1
SNRPD2
SNRPD3
SNRPE
SNRPF
SNRPG
SNU13
SPANXN2
TIAL1
USP9X
VPS28
Entrez ID
11218
6607
HPRD ID
05859
09036
Ensembl ID
ENSG00000064703
ENSG00000205571
Uniprot IDs
Q9H4N4
Q9UHI6
B4DP61
E7EQZ4
Q16637
PDB IDs
2OXC
3B7G
1G5V
1MHN
2LEH
4A4E
4A4G
4GLI
4QQ6
5XJL
5XJQ
5XJR
5XJS
5XJT
5XJU
7W2P
7W30
Enriched GO Terms of Interacting Partners
?
SMN-Sm Protein Complex
Spliceosomal SnRNP Assembly
Protein-RNA Complex Assembly
7-methylguanosine Cap Hypermethylation
Spliceosomal Complex Assembly
Small Nuclear Ribonucleoprotein Complex
U4 SnRNP
Methylosome
Protein-containing Complex Assembly
U2 SnRNP
Protein-containing Complex Organization
RNA Splicing, Via Transesterification Reactions
U1 SnRNP
U5 SnRNP
U2-type Prespliceosome Assembly
U12-type Spliceosomal Complex
RNA Splicing
U2-type Spliceosomal Complex
U2-type Catalytic Step 2 Spliceosome
PICln-Sm Protein Complex
U7 SnRNP
MRNA Processing
U4/U6 X U5 Tri-snRNP Complex
MRNA Metabolic Process
U2-type Precatalytic Spliceosome
Cellular Component Assembly
SMN Complex
RNA Processing
Gemini Of Cajal Bodies
Nucleoplasm
MRNA Splicing, Via Spliceosome
RNA Methylation
Precatalytic Spliceosome
Catalytic Step 2 Spliceosome
RNA Binding
Spliceosomal Complex
Macromolecule Methylation
RNA Metabolic Process
RNA Modification
Nucleus
Nuclear Body
Ribonucleoprotein Complex
Methylation
Protein-containing Complex
Spliceosomal Tri-snRNP Complex
Transcription Repressor Complex
Nucleic Acid Metabolic Process
Rhythmic Process
Cytosol
Histone Deacetylase Complex
SMN-Sm Protein Complex
Spliceosomal SnRNP Assembly
7-methylguanosine Cap Hypermethylation
Spliceosomal Complex Assembly
U1 SnRNP
U4 SnRNP
Methylosome
Protein-RNA Complex Assembly
U2-type Prespliceosome Assembly
RNA Splicing, Via Transesterification Reactions
RNA Splicing
U2 SnRNP
U2-type Precatalytic Spliceosome
U2-type Spliceosomal Complex
U2-type Catalytic Step 2 Spliceosome
Small Nuclear Ribonucleoprotein Complex
U5 SnRNP
U4/U6 X U5 Tri-snRNP Complex
RNA Processing
U12-type Spliceosomal Complex
MRNA Processing
PICln-Sm Protein Complex
MRNA Splicing, Via Spliceosome
Ribonucleoprotein Complex
MRNA Metabolic Process
U7 SnRNP
Precatalytic Spliceosome
Spliceosomal Complex
RNA Methylation
RNA Metabolic Process
Catalytic Step 2 Spliceosome
RNA Binding
RNA Modification
Macromolecule Methylation
Nucleic Acid Metabolic Process
Nucleobase-containing Compound Metabolic Process
Methylation
Nucleoplasm
Telomerase Holoenzyme Complex
Protein-containing Complex Assembly
Spliceosomal Tri-snRNP Complex
Cellular Component Assembly
Protein-containing Complex Organization
Cytosol
SMN Complex
Gemini Of Cajal Bodies
DNA-templated Transcription Termination
Telomerase RNA Binding
Intermediate Filament
Histone Pre-mRNA DCP Binding
Tagcloud
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Tagcloud (Difference)
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Tagcloud (Intersection)
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