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UPF3B and EXOSC4
Number of citations of the paper that reports this interaction (PubMedID
35831314
)
73
Data Source:
BioGRID
(biochemical)
HPRD
(in vivo, in vitro)
UPF3B
EXOSC4
Description
UPF3B regulator of nonsense mediated mRNA decay
exosome component 4
Image
GO Annotations
Cellular Component
Nucleus
Nucleoplasm
Nucleolus
Cytoplasm
Cytosol
Centriolar Satellite
Exon-exon Junction Complex
Neuronal Cell Body
Nuclear Exosome (RNase Complex)
Cytoplasmic Exosome (RNase Complex)
Exosome (RNase Complex)
Euchromatin
Nucleus
Nucleoplasm
Nucleolus
Cytoplasm
Cytosol
Nucleolar Exosome (RNase Complex)
Exoribonuclease Complex
Molecular Function
Nucleic Acid Binding
RNA Binding
MRNA Binding
Protein Binding
3'-5'-RNA Exonuclease Activity
RNA Binding
RNA Exonuclease Activity
Protein Binding
MRNA 3'-UTR AU-rich Region Binding
Biological Process
Nuclear-transcribed MRNA Catabolic Process, Nonsense-mediated Decay
Brain Development
Neuron Projection Development
Positive Regulation Of Neuron Differentiation
Positive Regulation Of Translation
MRNA Transport
Positive Regulation Of MRNA Cis Splicing, Via Spliceosome
Maturation Of 5.8S RRNA
Nuclear-transcribed MRNA Catabolic Process
RRNA Processing
RNA Processing
RNA Catabolic Process
RRNA Catabolic Process
Positive Regulation Of Cell Growth
U4 SnRNA 3'-end Processing
DNA Deamination
Defense Response To Virus
Nuclear MRNA Surveillance
Histone MRNA Catabolic Process
Poly(A)-dependent SnoRNA 3'-end Processing
Pathways
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA Splicing - Major Pathway
mRNA 3'-end processing
RNA Polymerase II Transcription Termination
Regulation of expression of SLITs and ROBOs
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)
ATF4 activates genes in response to endoplasmic reticulum stress
mRNA decay by 3' to 5' exoribonuclease
Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA
Tristetraprolin (TTP, ZFP36) binds and destabilizes mRNA
KSRP (KHSRP) binds and destabilizes mRNA
Major pathway of rRNA processing in the nucleolus and cytosol
Nuclear RNA decay
Drugs
Diseases
Syndromic X-linked mental retardation, including: Turner type (MRXST); Siderius type (MRXSSD) ; Cabezas type (MRXC); Raymond type (MRXSR); Type10 (MRXS10); Type14 (MRXS14); Mental retardation with isolated growth hormone deficiency (MRGH)
GWAS
Asthma (
31959851
)
Bipolar disorder (
31043756
)
Bipolar I disorder (
31043756
)
Serum metabolite concentrations in chronic kidney disease (
33838163
)
Interacting Genes
15 interacting genes:
CEBPA
EIF4A3
EIF6
EXOSC4
HBB
MAGOH
MCRS1
OGT
RBBP6
RBM8A
SRPK2
TTC19
UPF1
UPF2
XRN1
34 interacting genes:
AKR1A1
DIS3
DXO
EEF1A1
EXOSC1
EXOSC10
EXOSC2
EXOSC3
EXOSC6
EXOSC7
EXOSC8
EXOSC9
FAHD1
GADD45GIP1
GTF2IRD1
HNRNPD
LNX1
LRRC8D
MPZL1
MTREX
NEK1
PALS2
POLE2
PPARA
PRRC2B
PTEN
SDCBP
SKIC2
SMPD4
TSEN15
UPF1
UPF2
UPF3B
WTAP
Entrez ID
65109
54512
HPRD ID
02247
16221
Ensembl ID
ENSG00000125351
ENSG00000178896
Uniprot IDs
Q9BZI7
Q9NPD3
PDB IDs
1UW4
2XB2
7NWU
2NN6
6D6Q
6D6R
6H25
9G8M
9G8N
9G8O
9G8P
Enriched GO Terms of Interacting Partners
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Nuclear-transcribed MRNA Catabolic Process
Exon-exon Junction Complex
MRNA Catabolic Process
RNA Catabolic Process
Nuclear-transcribed MRNA Catabolic Process, Nonsense-mediated Decay
MRNA Metabolic Process
Nuclear Export
RNA Metabolic Process
Nucleic Acid Metabolic Process
MRNA Export From Nucleus
RNA Export From Nucleus
Nucleobase-containing Compound Catabolic Process
Regulation Of Translation
Nucleobase-containing Compound Metabolic Process
Nuclear Transport
Nucleocytoplasmic Transport
MRNA Transport
Negative Regulation Of Gene Expression
RNA Transport
Regulation Of Nuclear-transcribed MRNA Catabolic Process, Nonsense-mediated Decay
Histone MRNA Catabolic Process
Post-transcriptional Regulation Of Gene Expression
Catabolic Process
Negative Regulation Of Macromolecule Metabolic Process
Nucleobase-containing Compound Transport
Macromolecule Catabolic Process
RNA Binding
Histone MRNA Metabolic Process
Negative Regulation Of Metabolic Process
Negative Regulation Of Macromolecule Biosynthetic Process
Exon-exon Junction Subcomplex Mago-y14
Regulation Of MRNA Splicing, Via Spliceosome
Negative Regulation Of Biosynthetic Process
RNA Processing
Regulation Of Metabolic Process
Macromolecule Metabolic Process
Regulation Of MRNA Processing
Nucleolus
Regulation Of MRNA Metabolic Process
Regulation Of Protein Metabolic Process
Regulation Of RNA Splicing
Negative Regulation Of Translation
Regulation Of Macromolecule Metabolic Process
G-quadruplex RNA Binding
Nuclear Speck
MRNA Processing
Regulation Of Nucleobase-containing Compound Metabolic Process
Regulation Of Gene Expression
NSL Complex
Nuclear MRNA Surveillance
Nuclear Exosome (RNase Complex)
Exosome (RNase Complex)
RNA Catabolic Process
Cytoplasmic Exosome (RNase Complex)
Nucleolar Exosome (RNase Complex)
Nuclear-transcribed MRNA Catabolic Process
MRNA Catabolic Process
RNA Exonuclease Activity
Nucleobase-containing Compound Catabolic Process
Nuclear RNA Surveillance
Nuclear MRNA Surveillance
RNA Surveillance
Exonucleolytic Trimming To Generate Mature 3'-end Of 5.8S RRNA From Tricistronic RRNA Transcript (SSU-rRNA, 5.8S RRNA, LSU-rRNA)
TRNA Surveillance
TRAMP-dependent TRNA Surveillance Pathway
Nuclear Polyadenylation-dependent RRNA Catabolic Process
U4 SnRNA 3'-end Processing
MRNA Metabolic Process
RRNA 3'-end Processing
TRNA Decay
SnRNA Metabolic Process
RNA Metabolic Process
Macromolecule Catabolic Process
SnRNA 3'-end Processing
RRNA Processing
3'-5'-RNA Exonuclease Activity
RRNA Metabolic Process
SnRNA Processing
RNA Binding
Nucleic Acid Metabolic Process
CUT Catabolic Process
RRNA Catabolic Process
RNA 3'-end Processing
Catabolic Process
Poly(A)-dependent SnoRNA 3'-end Processing
Negative Regulation Of Gene Expression
RNA Processing
Nucleobase-containing Compound Metabolic Process
Nucleoplasm
Macromolecule Metabolic Process
U5 SnRNA 3'-end Processing
U1 SnRNA 3'-end Processing
Nuclear-transcribed MRNA Catabolic Process, Nonsense-mediated Decay
Nucleolus
Positive Regulation Of MRNA Cis Splicing, Via Spliceosome
Sno(s)RNA Metabolic Process
TRNA Metabolic Process
Exoribonuclease Complex
Negative Regulation Of Macromolecule Biosynthetic Process
Negative Regulation Of Macromolecule Metabolic Process
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