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UPF3B and RBM8A
Number of citations of the paper that reports this interaction (PubMedID
35831314
)
73
Data Source:
BioGRID
(biochemical)
HPRD
(in vivo)
UPF3B
RBM8A
Description
UPF3B regulator of nonsense mediated mRNA decay
RNA binding motif protein 8A
Image
GO Annotations
Cellular Component
Nucleus
Nucleoplasm
Nucleolus
Cytoplasm
Cytosol
Centriolar Satellite
Exon-exon Junction Complex
Neuronal Cell Body
Nucleus
Nucleoplasm
Spliceosomal Complex
Cytoplasm
Cytosol
Nuclear Speck
Dendrite
Exon-exon Junction Complex
Neuronal Cell Body
U2-type Catalytic Step 1 Spliceosome
Catalytic Step 2 Spliceosome
Exon-exon Junction Subcomplex Mago-y14
Molecular Function
Nucleic Acid Binding
RNA Binding
MRNA Binding
Protein Binding
Nucleic Acid Binding
RNA Binding
MRNA Binding
Protein Binding
Biological Process
Nuclear-transcribed MRNA Catabolic Process, Nonsense-mediated Decay
Brain Development
Neuron Projection Development
Positive Regulation Of Neuron Differentiation
Positive Regulation Of Translation
MRNA Transport
Positive Regulation Of MRNA Cis Splicing, Via Spliceosome
Nuclear-transcribed MRNA Catabolic Process, Nonsense-mediated Decay
Regulation Of Alternative MRNA Splicing, Via Spliceosome
MRNA Splicing, Via Spliceosome
RNA Processing
MRNA Processing
MRNA Export From Nucleus
Regulation Of Translation
RNA Splicing
Regulation Of MRNA Processing
MRNA Transport
Regulation Of Nuclear-transcribed MRNA Catabolic Process, Nonsense-mediated Decay
Pathways
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA Splicing - Major Pathway
mRNA 3'-end processing
RNA Polymerase II Transcription Termination
Regulation of expression of SLITs and ROBOs
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA Splicing - Major Pathway
mRNA 3'-end processing
RNA Polymerase II Transcription Termination
Regulation of expression of SLITs and ROBOs
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)
Drugs
Diseases
Syndromic X-linked mental retardation, including: Turner type (MRXST); Siderius type (MRXSSD) ; Cabezas type (MRXC); Raymond type (MRXSR); Type10 (MRXS10); Type14 (MRXS14); Mental retardation with isolated growth hormone deficiency (MRGH)
GWAS
Interacting Genes
15 interacting genes:
CEBPA
EIF4A3
EIF6
EXOSC4
HBB
MAGOH
MCRS1
OGT
RBBP6
RBM8A
SRPK2
TTC19
UPF1
UPF2
XRN1
17 interacting genes:
APP
CDC42
DPH1
EIF4A3
FBXO25
IKBKG
IPO13
KAT2B
MAGOH
MAGOHB
MCM7
SF3B2
SRPK2
TCF12
TOE1
UPF3A
UPF3B
Entrez ID
65109
9939
HPRD ID
02247
05609
Ensembl ID
ENSG00000125351
ENSG00000265241
Uniprot IDs
Q9BZI7
A0A023T787
Q9Y5S9
PDB IDs
1UW4
2XB2
7NWU
1P27
2HYI
2J0Q
2J0S
2XB2
3EX7
5XJC
5YZG
6ICZ
6QDV
7A5P
7W59
7W5A
7W5B
7ZNJ
8C6J
8I0W
9FMD
Enriched GO Terms of Interacting Partners
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Nuclear-transcribed MRNA Catabolic Process
Exon-exon Junction Complex
MRNA Catabolic Process
RNA Catabolic Process
Nuclear-transcribed MRNA Catabolic Process, Nonsense-mediated Decay
MRNA Metabolic Process
Nuclear Export
RNA Metabolic Process
Nucleic Acid Metabolic Process
MRNA Export From Nucleus
RNA Export From Nucleus
Nucleobase-containing Compound Catabolic Process
Regulation Of Translation
Nucleobase-containing Compound Metabolic Process
Nuclear Transport
Nucleocytoplasmic Transport
MRNA Transport
Negative Regulation Of Gene Expression
RNA Transport
Regulation Of Nuclear-transcribed MRNA Catabolic Process, Nonsense-mediated Decay
Histone MRNA Catabolic Process
Post-transcriptional Regulation Of Gene Expression
Catabolic Process
Negative Regulation Of Macromolecule Metabolic Process
Nucleobase-containing Compound Transport
Macromolecule Catabolic Process
RNA Binding
Histone MRNA Metabolic Process
Negative Regulation Of Metabolic Process
Negative Regulation Of Macromolecule Biosynthetic Process
Exon-exon Junction Subcomplex Mago-y14
Regulation Of MRNA Splicing, Via Spliceosome
Negative Regulation Of Biosynthetic Process
RNA Processing
Regulation Of Metabolic Process
Macromolecule Metabolic Process
Regulation Of MRNA Processing
Nucleolus
Regulation Of MRNA Metabolic Process
Regulation Of Protein Metabolic Process
Regulation Of RNA Splicing
Negative Regulation Of Translation
Regulation Of Macromolecule Metabolic Process
G-quadruplex RNA Binding
Nuclear Speck
MRNA Processing
Regulation Of Nucleobase-containing Compound Metabolic Process
Regulation Of Gene Expression
NSL Complex
Nuclear MRNA Surveillance
Exon-exon Junction Complex
Nuclear-transcribed MRNA Catabolic Process, Nonsense-mediated Decay
Regulation Of Nuclear-transcribed MRNA Catabolic Process, Nonsense-mediated Decay
Nuclear-transcribed MRNA Catabolic Process
MRNA Transport
MRNA Catabolic Process
Regulation Of MRNA Processing
RNA Transport
Nucleus
Regulation Of MRNA Metabolic Process
Regulation Of RNA Splicing
RNA Catabolic Process
MRNA Metabolic Process
Nucleobase-containing Compound Transport
Catalytic Step 2 Spliceosome
Exon-exon Junction Subcomplex Mago-y14
Nuclear Speck
Regulation Of MRNA Splicing, Via Spliceosome
Positive Regulation Of MRNA Cis Splicing, Via Spliceosome
Nucleoplasm
Positive Regulation Of Gene Expression
Macromolecule Metabolic Process
Nucleobase-containing Compound Catabolic Process
RNA Splicing
Nucleolus
Spliceosomal Complex
RNA Metabolic Process
MRNA Export From Nucleus
MRNA Splicing, Via Spliceosome
Regulation Of Translation
RNA Splicing, Via Transesterification Reactions
MRNA Processing
U2-type Catalytic Step 1 Spliceosome
Nucleic Acid Metabolic Process
RNA Export From Nucleus
Negative Regulation Of Gene Expression
Positive Regulation Of Neuron Differentiation
Nuclear Transport
Nucleocytoplasmic Transport
RNA Processing
Positive Regulation Of Glycolytic Process
Regulation Of Attachment Of Spindle Microtubules To Kinetochore
Cytoplasm
Post-transcriptional Regulation Of Gene Expression
Nuclear Export
Positive Regulation Of Cell Cycle
Regulation Of Nucleobase-containing Compound Metabolic Process
Mitotic Spindle
Positive Regulation Of MRNA Splicing, Via Spliceosome
Neuronal Cell Body
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Tagcloud (Intersection)
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