Wiki-Pi
About
Search
People
Updates
Search
CHD4 and XRN1
Number of citations of the paper that reports this interaction (PubMedID
15231747
)
47
Data Source:
HPRD
(two hybrid)
CHD4
XRN1
Description
chromodomain helicase DNA binding protein 4
5'-3' exoribonuclease 1
Image
No pdb structure
GO Annotations
Cellular Component
Chromosome, Telomeric Region
Chromatin
Nucleus
Nucleoplasm
Cytoplasm
Centrosome
Cytoskeleton
Membrane
NuRD Complex
Protein-containing Complex
RNA Polymerase II Transcription Regulator Complex
Site Of DNA Damage
Cerebellar Granule Cell To Purkinje Cell Synapse
P-body
Nucleus
Cytoplasm
Cytosol
Plasma Membrane
Membrane
Dendrite
Neuronal Cell Body
Molecular Function
Nucleotide Binding
Transcription Coregulator Binding
DNA Binding
Chromatin Binding
Transcription Corepressor Activity
Protein Binding
ATP Binding
Zinc Ion Binding
Hydrolase Activity
ATP Hydrolysis Activity
Nucleosomal DNA Binding
Histone Binding
Histone Deacetylase Binding
Metal Ion Binding
RNA Polymerase II-specific DNA-binding Transcription Factor Binding
DNA-binding Transcription Factor Binding
ATP-dependent Chromatin Remodeler Activity
G-quadruplex RNA Binding
Nucleic Acid Binding
DNA Binding
RNA Binding
Nuclease Activity
Exonuclease Activity
5'-3' RNA Exonuclease Activity
Protein Binding
5'-3' Exonuclease Activity
Hydrolase Activity
G-quadruplex DNA Binding
Telomerase RNA Binding
Biological Process
Negative Regulation Of Transcription By RNA Polymerase II
Double-strand Break Repair Via Homologous Recombination
Chromatin Organization
Chromatin Remodeling
Negative Regulation Of Gene Expression
Oxygen Transport
Regulation Of Cell Fate Specification
Negative Regulation Of DNA-templated Transcription
Positive Regulation Of DNA-templated Transcription
Regulation Of Synapse Assembly
Terminal Button Organization
Regulation Of Stem Cell Differentiation
Nuclear-transcribed MRNA Catabolic Process
RNA Metabolic Process
RRNA Catabolic Process
Negative Regulation Of Translation
Negative Regulation Of Telomere Maintenance Via Telomerase
Response To Testosterone
Nuclear MRNA Surveillance
Histone MRNA Catabolic Process
Cellular Response To Cycloheximide
Cellular Response To Puromycin
Pathways
HDACs deacetylate histones
ERCC6 (CSB) and EHMT2 (G9a) positively regulate rRNA expression
Regulation of TP53 Activity through Acetylation
RNA Polymerase I Transcription Initiation
Regulation of PTEN gene transcription
Regulation of PTEN gene transcription
NGF-stimulated transcription
Potential therapeutics for SARS
Regulation of endogenous retroelements by KRAB-ZFP proteins
Transcriptional regulation of brown and beige adipocyte differentiation by EBF2
Regulation of endogenous retroelements by Piwi-interacting RNAs (piRNAs)
mRNA decay by 5' to 3' exoribonuclease
Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA
Tristetraprolin (TTP, ZFP36) binds and destabilizes mRNA
Drugs
Diseases
GWAS
Heel bone mineral density (
30598549
)
Mean spheric corpuscular volume (
32888494
)
Myopia (pathological) (
23049088
)
Benign childhood epilepsy with centro-temporal spikes (
32580138
)
Birth weight (
31043758
)
Caffeine consumption from coffee or tea (
33287642
)
Heel bone mineral density (
30598549
)
Mean spheric corpuscular volume (
32888494
)
Mosquito bite size (
28199695
)
Parkinson's disease motor subtype (tremor to postural instability/gait difficulty score ratio) (
33987465
)
Waist-hip ratio (
28552196
)
Interacting Genes
27 interacting genes:
ATM
ATR
CDR1
CEBPA
EP300
EPAS1
H2AC4
H2BC3
H3-4
H3C1
H4C1
HDAC1
HIF1A
IKZF4
MTNR1A
NCAM2
PSTPIP1
PTEN
RNF8
RORC
SMARCA4
SUMO2
TRIM27
TTN
TWIST1
UBE2I
XRN1
67 interacting genes:
ADGRE5
ALDOA
ANGPTL6
AP1G2
ATP5MC2
B3GALT6
BAG6
C1GALT1
CBX5
CCT5
CENPBD1P
CHD4
CTSB
CTSH
DCP1B
DNASE2
DPP7
DXO
EXOSC1
EXOSC10
EXOSC6
EXOSC8
FADS1
FBXO7
GLMP
HEATR1
HERC2P4
HNRNPA1
KATNB1
LDHA
LEPR
LGALS3BP
LINC01541
LSM4
MAN2C1
MIR34C
MIR429
MIR7-1
MTCH2
MTREX
NDUFA13
NDUFB10
NDUFB9
PABPC4
PLEKHG2
POLD2
PPP2CA
PRADC1
PSMB5
RBMX
RNF10
RNF187
SDHB
SKIC2
SLC61A1
SMARCD2
SNHG1
SPATA20
SRRM2
STAM2
TMEM50A
UPF1
UPF2
UPF3B
VWA5B2
WAPL
ZFP36
Entrez ID
1108
54464
HPRD ID
04472
10470
Ensembl ID
ENSG00000111642
ENSG00000114127
Uniprot IDs
A0A2U3TZM0
F5GWX5
Q14839
Q8IZH2
PDB IDs
1MM2
1MM3
2EE1
2L5U
2L75
2N5N
4O9I
6BGG
6Q3M
6RYR
6RYU
8D4Y
Enriched GO Terms of Interacting Partners
?
Chromatin Remodeling
DNA Binding
Chromatin Organization
Protein Localization To Chromosome
Negative Regulation Of Nucleobase-containing Compound Metabolic Process
Protein Heterodimerization Activity
Nucleoplasm
Positive Regulation Of Nucleobase-containing Compound Metabolic Process
Epigenetic Regulation Of Gene Expression
Structural Constituent Of Chromatin
Negative Regulation Of Macromolecule Metabolic Process
Chromosome, Telomeric Region
Positive Regulation Of RNA Biosynthetic Process
Positive Regulation Of DNA-templated Transcription
Transcription Coregulator Binding
Negative Regulation Of Metabolic Process
Chromosome
PML Body
Nucleus
Nucleosome
Regulation Of Signal Transduction By P53 Class Mediator
Positive Regulation Of RNA Metabolic Process
Regulation Of Macromolecule Biosynthetic Process
Establishment Of RNA Localization To Telomere
Establishment Of Protein-containing Complex Localization To Telomere
Negative Regulation Of Macromolecule Biosynthetic Process
Regulation Of Cellular Response To Heat
Positive Regulation Of Telomerase Catalytic Core Complex Assembly
Positive Regulation Of Macromolecule Biosynthetic Process
Positive Regulation Of Transcription By RNA Polymerase II
Protein-containing Complex
Circadian Rhythm
Nucleosome Organization
Negative Regulation Of DNA-templated Transcription
Negative Regulation Of RNA Biosynthetic Process
Rhythmic Process
Negative Regulation Of Biosynthetic Process
Positive Regulation Of Biosynthetic Process
Regulation Of Double-strand Break Repair
SUMO Transferase Activity
Positive Regulation Of Macromolecule Metabolic Process
P53 Binding
Negative Regulation Of RNA Metabolic Process
Histone H2AXS139 Kinase Activity
Negative Regulation Of T Cell Apoptotic Process
Epithelial Cell Maturation
Regulation Of Transcription By RNA Polymerase II
Embryonic Placenta Development
Regulation Of Nucleobase-containing Compound Metabolic Process
Regulation Of Gene Expression
Nucleobase-containing Compound Catabolic Process
RNA Catabolic Process
Nuclear-transcribed MRNA Catabolic Process
MRNA Catabolic Process
Macromolecule Catabolic Process
Exosome (RNase Complex)
Catabolic Process
Nuclear Exosome (RNase Complex)
Nuclear-transcribed MRNA Catabolic Process, Nonsense-mediated Decay
MRNA Metabolic Process
Nucleobase-containing Compound Metabolic Process
Nucleolar Exosome (RNase Complex)
Nuclear MRNA Surveillance
Cytoplasmic Exosome (RNase Complex)
RNA Exonuclease Activity
Positive Regulation Of MRNA Cis Splicing, Via Spliceosome
Nuclear RNA Surveillance
RNA Surveillance
ATP Biosynthetic Process
RNA Metabolic Process
Negative Regulation Of Gene Expression
Nucleoside Triphosphate Biosynthetic Process
ATP Metabolic Process
Positive Regulation Of MRNA Splicing, Via Spliceosome
Nucleic Acid Metabolic Process
Proton Motive Force-driven ATP Synthesis
MRNA 3'-UTR Binding
Purine Ribonucleotide Biosynthetic Process
RNA Binding
Positive Regulation Of RNA Splicing
Generation Of Precursor Metabolites And Energy
Ribose Phosphate Biosynthetic Process
Supraspliceosomal Complex
SnRNA Metabolic Process
Purine Nucleotide Biosynthetic Process
MRNA Binding
Exon-exon Junction Complex
Regulation Of MRNA Splicing, Via Spliceosome
Negative Regulation Of Metabolic Process
Proton Motive Force-driven Mitochondrial ATP Synthesis
Energy Derivation By Oxidation Of Organic Compounds
RNA Processing
Purine Ribonucleotide Metabolic Process
Nucleotide Biosynthetic Process
MRNA Transport
SnRNA Catabolic Process
Ribonucleotide Metabolic Process
Regulation Of MRNA Processing
RRNA Processing
Ribose Phosphate Metabolic Process
Tagcloud
?
Tagcloud (Difference)
?
Tagcloud (Intersection)
?