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TRIM28 and SIN3A
Number of citations of the paper that reports this interaction (PubMedID
29955894
)
65
Data Source:
BioGRID
(affinity chromatography technology, pull down)
TRIM28
SIN3A
Description
tripartite motif containing 28
SIN3 transcription regulator family member A
Image
No pdb structure
GO Annotations
Cellular Component
Chromatin
Euchromatin
Heterochromatin
Nucleus
Nucleoplasm
Protein-containing Complex
RNA Polymerase II Transcription Regulator Complex
Histone Deacetylase Complex
Kinetochore
Chromatin
Nucleus
Nucleoplasm
Transcription Regulator Complex
Chromosome
Nucleolus
Transcription Repressor Complex
Protein-containing Complex
Sin3-type Complex
Molecular Function
DNA Binding
Chromatin Binding
Transcription Coregulator Activity
Transcription Coactivator Activity
Transcription Corepressor Activity
RNA Binding
Protein Kinase Activity
Ubiquitin-protein Transferase Activity
Protein Binding
Zinc Ion Binding
Transferase Activity
SUMO Transferase Activity
Ubiquitin Protein Ligase Binding
Krueppel-associated Box Domain Binding
Metal Ion Binding
Ubiquitin Protein Ligase Activity
Ubiquitin-like Protein Ligase Activity
Chromo Shadow Domain Binding
Promoter-specific Chromatin Binding
DNA Binding
Chromatin Binding
Transcription Corepressor Activity
RNA Binding
Protein Binding
Protein-containing Complex Binding
RNA Polymerase II-specific DNA-binding Transcription Factor Binding
Transcription Regulator Inhibitor Activity
Biological Process
Negative Regulation Of Transcription By RNA Polymerase II
In Utero Embryonic Development
Epithelial To Mesenchymal Transition
DNA Repair
Chromatin Organization
DNA Methylation-dependent Constitutive Heterochromatin Formation
Embryo Implantation
Positive Regulation Of Macromolecule Metabolic Process
Protein Sumoylation
Positive Regulation Of Protein Import Into Nucleus
Epigenetic Programming Of Gene Expression
Proteasome-mediated Ubiquitin-dependent Protein Catabolic Process
Suppression Of Viral Release By Host
Innate Immune Response
Positive Regulation Of DNA Repair
Negative Regulation Of Single Stranded Viral RNA Replication Via Double Stranded DNA Intermediate
Negative Regulation Of DNA-templated Transcription
Positive Regulation Of DNA-templated Transcription
Positive Regulation Of Nucleobase-containing Compound Metabolic Process
Convergent Extension Involved In Axis Elongation
Embryonic Placenta Morphogenesis
Genomic Imprinting
Negative Regulation Of Transcription By RNA Polymerase II
In Utero Embryonic Development
Activation Of Innate Immune Response
Positive Regulation Of Defense Response To Virus By Host
Hematopoietic Progenitor Cell Differentiation
DNA Replication
Regulation Of DNA-templated Transcription
Intracellular Protein Localization
Regulation Of Hormone Levels
Positive Regulation Of G2/M Transition Of Mitotic Cell Cycle
Cerebral Cortex Neuron Differentiation
Negative Regulation Of Cell Migration
Negative Regulation Of Transforming Growth Factor Beta Receptor Signaling Pathway
Regulation Of Axon Extension
Heterochromatin Formation
Negative Regulation Of Circadian Rhythm
Negative Regulation Of Apoptotic Process
Positive Regulation Of Neuron Differentiation
Negative Regulation Of DNA-templated Transcription
Rhythmic Process
Response To Methylglyoxal
Type I Interferon-mediated Signaling Pathway
Cellular Response To Glucose Stimulus
Cellular Response To Tert-butyl Hydroperoxide
Negative Regulation Of Protein Localization To Nucleus
Negative Regulation Of Stem Cell Population Maintenance
Positive Regulation Of Stem Cell Population Maintenance
Cellular Response To Dopamine
Pathways
Generic Transcription Pathway
SUMOylation of transcription cofactors
HCMV Early Events
Regulation of endogenous retroelements by KRAB-ZFP proteins
Regulation of endogenous retroelements by KRAB-ZFP proteins
SUMOylation of transcription cofactors
Regulation of lipid metabolism by PPARalpha
NoRC negatively regulates rRNA expression
RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function
Loss of MECP2 binding ability to 5mC-DNA
Regulation of MECP2 expression and activity
MECP2 regulates neuronal receptors and channels
MECP2 regulates transcription of neuronal ligands
FOXO-mediated transcription of oxidative stress, metabolic and neuronal genes
STAT3 nuclear events downstream of ALK signaling
Cytoprotection by HMOX1
Regulation of MITF-M-dependent genes involved in apoptosis
Regulation of MITF-M-dependent genes involved in cell cycle and proliferation
Factors involved in megakaryocyte development and platelet production
Drugs
Diseases
GWAS
Mean corpuscular hemoglobin (
32888494
)
Caffeine consumption from tea (
33287642
)
Estimated glomerular filtration rate (
31152163
)
Height (
20189936
)
Mean platelet volume (
32888494
)
Platelet distribution width (
32888494
)
Sudden cardiac arrest (
21658281
)
Type 2 diabetes (
32499647
)
Interacting Genes
90 interacting genes:
CBX1
CBX3
CBX5
CCAR2
CDC34
CDC42
CDCA4
CDKN2A
CEBPB
CHAF1A
CHD3
EAF1
ESR1
FBP1
FES
H4C1
HDAC10
HTRA2
IRF1
IRF7
LIN28A
LINC00624
LYN
MAGEA2
MAGEA2B
MAGEA6
MAGEC2
MAGED1
MAPKAPK2
MCM3
MCM5
MORC2
MYB
NR3C1
NR4A1
NR4A3
NSMCE3
OGT
PFDN5
PHF13
PPP2CA
PRKAA1
PTEN
RB1
RFC4
RNF4
SERTAD1
SERTAD2
SETDB1
SIN3A
SIRT1
SKI
SMARCAD1
SMURF2
SPG7
STAT3
SUMO2
TP73
TRIM24
TWIST1
UBE2C
UBE2D1
UBE2D2
UBE2D3
UBE2E1
UBE2E2
UBE2H
UBE2I
UBE2L3
UBE2L6
UBE2N
UBE2U
UBE3D
URI1
VHL
VIM
YWHAQ
ZBTB33
ZNF10
ZNF133
ZNF197
ZNF274
ZNF354A
ZNF354C
ZNF382
ZNF420
ZNF496
ZNF689
ZNF74
ZNF93
101 interacting genes:
ARID4A
ARID4B
ATM
BCL11A
BCL6
BCL6B
BHLHE40
BNIP2
BRMS1
BRMS1L
CBFA2T2
CEBPA
CIAO2A
COPS2
CTBP1
CTCF
CUL4B
CYTOR
DACH1
DDB1
DDX20
DHX30
DMRTC1B
ETV6
FOXK2
H3-4
HBP1
HCFC1
HDAC1
HDAC2
HDAC7
HDAC9
HEY2
HTT
IKZF1
IKZF4
ING1
IRF5
KLF10
KLF11
KLF13
KLF16
KLF9
LRCH4
MAD1L1
MBD2
MBD4
MECP2
MEN1
MNT
MORF4L2
MXD1
MXD4
MXI1
MYB
NDRG4
NFKB1
NFKB2
NR2E3
OGT
PA2G4
PBX3
PHB1
PHF12
PML
PRMT5
PTEN
PTMA
RBBP4
RBBP7
RBP1
RBPJ
REL
RELA
RELB
RLIM
RUNX1T1
SAP18
SAP30
SETDB1
SFPQ
SH3GLB1
SKI
SMAD3
SMARCA4
SMARCC1
SMARCE1
SNW1
SPI1
STAT3
SUMO2
SYT1
TAL1
TFCP2
TGIF1
THAP11
TOPORS
TP53
TRIM28
TSN
ZBTB16
Entrez ID
10155
25942
HPRD ID
03445
09690
Ensembl ID
ENSG00000130726
ENSG00000169375
Uniprot IDs
Q13263
Q96ST3
PDB IDs
1FP0
2RO1
2YVR
6H3A
6I9H
6QAJ
6QU1
7Z36
Enriched GO Terms of Interacting Partners
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Nucleus
Regulation Of Nucleobase-containing Compound Metabolic Process
Regulation Of DNA-templated Transcription
Regulation Of RNA Biosynthetic Process
Regulation Of RNA Metabolic Process
Regulation Of Macromolecule Biosynthetic Process
Regulation Of Gene Expression
Regulation Of Primary Metabolic Process
Regulation Of Macromolecule Metabolic Process
Negative Regulation Of DNA-templated Transcription
Negative Regulation Of RNA Biosynthetic Process
Negative Regulation Of RNA Metabolic Process
Regulation Of Metabolic Process
Negative Regulation Of Nucleobase-containing Compound Metabolic Process
Regulation Of Transcription By RNA Polymerase II
Negative Regulation Of Macromolecule Biosynthetic Process
Negative Regulation Of Metabolic Process
Negative Regulation Of Transcription By RNA Polymerase II
Negative Regulation Of Macromolecule Metabolic Process
Negative Regulation Of Biosynthetic Process
Ubiquitin Conjugating Enzyme Activity
Nucleoplasm
Cellular Response To Stress
DNA Damage Response
Protein Modification By Small Protein Conjugation
Protein Polyubiquitination
Ubiquitin-protein Transferase Activity
Protein-containing Complex
PML Body
DNA Binding
Positive Regulation Of Macromolecule Metabolic Process
Post-translational Protein Modification
Protein Ubiquitination
Macromolecule Catabolic Process
Positive Regulation Of Nucleobase-containing Compound Metabolic Process
Chromatin
Positive Regulation Of DNA-templated Transcription
Positive Regulation Of RNA Biosynthetic Process
Ubiquitin-dependent Protein Catabolic Process
Response To Stress
Modification-dependent Protein Catabolic Process
Positive Regulation Of Metabolic Process
Positive Regulation Of RNA Metabolic Process
Chromatin Organization
DNA-binding Transcription Factor Binding
Protein Catabolic Process
Chromatin Binding
RNA Polymerase II Cis-regulatory Region Sequence-specific DNA Binding
Protein K48-linked Ubiquitination
DNA-binding Transcription Factor Activity, RNA Polymerase II-specific
Negative Regulation Of RNA Biosynthetic Process
Negative Regulation Of DNA-templated Transcription
Negative Regulation Of RNA Metabolic Process
Negative Regulation Of Nucleobase-containing Compound Metabolic Process
Negative Regulation Of Transcription By RNA Polymerase II
Regulation Of DNA-templated Transcription
Regulation Of RNA Biosynthetic Process
Regulation Of Transcription By RNA Polymerase II
Regulation Of RNA Metabolic Process
Negative Regulation Of Macromolecule Biosynthetic Process
Negative Regulation Of Biosynthetic Process
Negative Regulation Of Macromolecule Metabolic Process
Regulation Of Nucleobase-containing Compound Metabolic Process
Negative Regulation Of Metabolic Process
Nucleoplasm
Regulation Of Gene Expression
Regulation Of Macromolecule Biosynthetic Process
Nucleus
Regulation Of Primary Metabolic Process
DNA Binding
Regulation Of Macromolecule Metabolic Process
RNA Polymerase II Cis-regulatory Region Sequence-specific DNA Binding
Regulation Of Metabolic Process
Positive Regulation Of DNA-templated Transcription
Positive Regulation Of RNA Biosynthetic Process
Positive Regulation Of RNA Metabolic Process
Chromatin
Positive Regulation Of Nucleobase-containing Compound Metabolic Process
Positive Regulation Of Transcription By RNA Polymerase II
DNA-binding Transcription Factor Activity
Sin3-type Complex
Positive Regulation Of Macromolecule Biosynthetic Process
Positive Regulation Of Biosynthetic Process
Chromatin Organization
Positive Regulation Of Stem Cell Population Maintenance
Regulation Of Stem Cell Population Maintenance
Chromatin Binding
Positive Regulation Of Macromolecule Metabolic Process
Negative Regulation Of Developmental Process
Negative Regulation Of Stem Cell Population Maintenance
Positive Regulation Of Metabolic Process
DNA-binding Transcription Repressor Activity, RNA Polymerase II-specific
Chromatin Remodeling
DNA-binding Transcription Factor Activity, RNA Polymerase II-specific
DNA-binding Transcription Factor Binding
Transcription Repressor Complex
Epigenetic Regulation Of Gene Expression
Transcription Corepressor Activity
Regulation Of Transforming Growth Factor Beta Receptor Signaling Pathway
Regulation Of Developmental Process
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