RNF10 and PPARGC1A

Number of citations: 61 (PubMedID 37723588)
Data Source: BioGRID (unspecified method)

		RNF10	PPARGC1A
Name		ring finger protein 10	PPARG coactivator 1 alpha
Structure		No pdb structure
GO Annotations	Cellular Component	Nucleus Cytoplasm Cytosolic Ribosome Glutamatergic Synapse Extrinsic Component Of Postsynaptic Density Membrane	Chromatin Nucleus Nucleoplasm Cytoplasm Cytosol PML Body
	Molecular Function	Transcription Cis-regulatory Region Binding DNA Binding Protein Binding Zinc Ion Binding Transferase Activity Metal Ion Binding Ubiquitin Protein Ligase Activity	Nucleic Acid Binding DNA Binding Transcription Coregulator Activity Transcription Coactivator Activity RNA Binding Protein Binding Nuclear Receptor Binding Chromatin DNA Binding Ubiquitin Protein Ligase Binding Sequence-specific DNA Binding RNA Polymerase II-specific DNA-binding Transcription Factor Binding LncRNA Binding DNA-binding Transcription Factor Binding
	Biological Process	Protein Monoubiquitination Negative Regulation Of Schwann Cell Proliferation Protein Ubiquitination Positive Regulation Of Myelination Positive Regulation Of DNA-templated Transcription Positive Regulation Of Transcription By RNA Polymerase II Protein Autoubiquitination Postsynapse To Nucleus Signaling Pathway Ribosome-associated Ubiquitin-dependent Protein Catabolic Process	Temperature Homeostasis Intracellular Glucose Homeostasis Response To Dietary Excess Gluconeogenesis Regulation Of DNA-templated Transcription Transcription Initiation At RNA Polymerase II Promoter MRNA Processing Mitochondrion Organization Digestion RNA Splicing Positive Regulation Of Gene Expression Response To Muscle Activity Fatty Acid Oxidation Respiratory Electron Transport Chain Developmental Process Circadian Regulation Of Gene Expression Cellular Response To Oxidative Stress Homeostatic Process Response To Starvation Regulation Of Circadian Rhythm Negative Regulation Of Neuron Apoptotic Process Cellular Respiration Positive Regulation Of Gluconeogenesis Positive Regulation Of DNA-templated Transcription Positive Regulation Of Transcription By RNA Polymerase II Positive Regulation Of Fatty Acid Oxidation Rhythmic Process Negative Regulation Of Smooth Muscle Cell Proliferation Protein Stabilization Brown Fat Cell Differentiation Neuron Apoptotic Process Adipose Tissue Development Protein-containing Complex Assembly Energy Homeostasis Positive Regulation Of Cold-induced Thermogenesis
Pathways		None	PPARA activates gene expression Transcriptional activation of mitochondrial biogenesis Transcriptional activation of mitochondrial biogenesis Activation of PPARGC1A (PGC-1alpha) by phosphorylation Transcriptional regulation of white adipocyte differentiation Transcriptional regulation of white adipocyte differentiation SUMOylation of transcription cofactors Regulation of RUNX2 expression and activity Regulation of RUNX2 expression and activity FOXO-mediated transcription of oxidative stress, metabolic and neuronal genes Heme signaling MLL4 and MLL3 complexes regulate expression of PPARG target genes in adipogenesis and hepatic steatosis MLL4 and MLL3 complexes regulate expression of PPARG target genes in adipogenesis and hepatic steatosis Transcriptional regulation of brown and beige adipocyte differentiation by EBF2 Regulation of MITF-M dependent genes involved in metabolism Expression of BMAL (ARNTL), CLOCK, and NPAS2 RORA,B,C and NR1D1 (REV-ERBA) regulate gene expression
GWAS		Chronotype ( 26955885 ) Electrocardiogram morphology (amplitude at temporal datapoints) ( 32916098 ) Red cell distribution width ( 32888494 ) Reticulocyte fraction of red cells ( 27863252 ) Sensorimotor dexterity ( 31596458 ) Type 1 diabetes nephropathy ( 23028342 )	Aspartate aminotransferase levels ( 33547301 ) Coffee consumption ( 31046077 ) Cognitive decline rate in late mild cognitive impairment ( 26252872 ) Corneal astigmatism ( 29422769 ) Electrocardiogram morphology (amplitude at temporal datapoints) ( 32916098 ) Essential tremor ( 27797806 ) Estimated glomerular filtration rate ( 31152163 31015462 ) Femur bone mineral density x serum urate levels interaction ( 34046847 ) Hematocrit ( 32888494 ) Hemoglobin ( 32888494 ) Intralaminar thalamic nuclei volume ( 34006833 ) Lead levels ( 26025379 ) Molar-incisor hypomineralization ( 23918034 ) PR interval ( 32439900 ) Refractive error ( 32231278 ) Resting heart rate ( 27798624 ) Rosacea symptom severity ( 29771307 ) Schizophrenia ( 30285260 ) Subjective response to placebo treatment in childhood asthma (change in cough/wheeze) ( 31557306 ) Thiazide-induced adverse metabolic effects in hypertensive patients ( 23400010 )
Interacting Genes		380 interacting genes: AARS2 ACIN1 ACO1 ACO2 ACTN4 AFDN AFF2 AGGF1 AGO4 AKAP1 AKAP8 ALDH18A1 ANK3 ANKHD1 ANKRD17 ARHGEF1 ARHGEF2 ASCC3 ASH1L ATP1A1 ATXN1 BARD1 BAZ1B BAZ2B BCLAF1 BMS1 BTG3 CACTIN CALD1 CAND1 CAPRIN2 CARS1 CC2D1B CCAR1 CCAR2 CCDC90B CDC5L CDK11B CDK13 CEBPZ CELF1 CELF2 CFAP65 CGN CHD3 CMTR1 CMTR2 CNOT10 COL14A1 COL4A5 COPB1 COPG1 CPSF2 CRNKL1 CSDE1 CSE1L CTNNA1 CWC22 DDX1 DDX10 DDX23 DDX24 DDX27 DDX31 DDX42 DDX46 DDX54 DDX60 DDX60L DGCR8 DHX16 DHX32 DHX34 DHX36 DHX38 DHX9 DIS3 DMGDH DNAAF2 DNM1 DNTTIP2 DROSHA DSCR9 DSP DYNC2H1 DYSF DZIP1 EEF1A1 EFL1 EIF2AK3 EIF2AK4 EIF2B5 EIF3A EIF3C EIF3D EIF4ENIF1 EIF4G1 EIF4G2 EIF4G3 ELAC2 ELOA EPB41 EPB41L2 EPPK1 EPRS1 ERN1 ERN2 ESF1 FAM120A FAM120B FAM120C FASTKD5 FBRSL1 FLNA FTSJ3 FUBP3 GANAB GCFC2 GCN1 GEMIN4 GEMIN5 GFM1 GFM2 GIGYF2 GOLGA4 GOLGB1 GRB2 HDLBP HEATR1 HERC5 HNRNPA2B1 HNRNPA3 HNRNPF HNRNPH1 HOOK1 HSP90B1 HSPA9 HTATSF1 HUWE1 IARS1 IFIH1 IMMT INTS1 INTS2 INTS4 INTS5 INTS8 IPO11 IPO13 IPO4 IPO5 IPO7 IPO8 KDM1A KDM5A KIF1C KMT2C KPNB1 KTN1 L1TD1 LARP1 LARP1B LARS1 LONP1 LRIF1 LRP1 LRPPRC LRRFIP1 MAP1B MAP4 MARS1 MATR3 MDM2 MKRN3 MOV10 MOV10L1 MPHOSPH10 MTCL1 MVP MYBBP1A MYH14 MYH9 MYO18A NAA15 NCBP1 NCL NKTR NLRP11 NOC2L NOC3L NOL8 NOP14 NOP2 NOVA1 NOVA2 NSF NSUN2 NUMA1 NVL OAS3 PAN3 PARP1 PARP4 PC PDCD11 PDCD6IP PDS5A PIWIL1 PIWIL2 PIWIL3 PIWIL4 PKN2 PMS1 PNPT1 POLR2A PPARGC1A PPIG PRKDC PRP4K PRPF40A PRPF40B PRPF6 PRRC2C PTBP1 QARS1 R3HCC1L RANBP17 RANBP2 RANBP6 RBM10 RBM12B RBM15B RBM19 RBM25 RBM27 RBM28 RBM4 RBM44 RBM5 RBM6 RIMS1 RNASEL RNF17 ROCK2 RPGR RPS10 RPS20 RPS3 RRBP1 RSPH1 RTN4 SAFB2 SART1 SART3 SCAF11 SCAF8 SEC23IP SEC63 SECISBP2 SECISBP2L SETD1B SETDB1 SETX SF3A1 SF3B2 SF3B3 SIDT1 SIDT2 SLC4A1AP SMG1 SMG6 SMG8 SNCA SND1 SNRNP200 SORBS1 SPTBN1 SPTBN5 SRBD1 SRP68 SRSF1 SRSF3 STK10 SUB1 SUGP2 SUPT16H SUPT6H SUPV3L1 SUZ12 SWT1 SYMPK SYNE2 TARBP1 TARBP2 TARS1 TARS3 TASOR TBL3 TCERG1 TCF20 TDRD1 TDRD12 TDRD5 TDRD6 TDRD7 TDRD9 TENT4A TEP1 TERF1 TFIP11 TGS1 THRAP3 TIPARP TLE1 TLR3 TLR7 TLR8 TNPO1 TNPO2 TNPO3 TNRC6B TNS1 TOP2A TPX2 TRIM55 TRIM63 TRMT44 TULP3 TUT7 U2SURP UBE2D1 UBE2D2 UBE2E1 UBE2E2 UBE2H UBE2I UBE2J2 UBE2O UBE2U UBE2V1 UBE2W UBTD1 UBTF UNK UNKL UPF1 URB1 USO1 USP42 UTP14A UTP14C UTP20 VARS1 VCP VIL1 VIRMA WDR36 WDR43 WDR75 XAB2 XIRP1 XPO4 XPO6 XPO7 XPOT XRCC6 XRN1 XRN2 YBX1 ZBTB48 ZC3H11A ZC3H13 ZC3H4 ZCCHC2 ZFC3H1 ZFR ZFR2 ZNF106 ZNF346 ZNFX1	44 interacting genes: CAPNS1 CDK6 CREBBP ESR1 ESR2 ESRRA ESRRG FBXW7 GSK3B HCFC1 HNF4A LRPPRC MAPK14 MED1 MED12 MED14 MED17 MYBBP1A NCL NCOA1 NCOA6 NDN NR1H4 NR1I2 NR1I3 NR3C1 NRF1 PPARA PPARD PPARG RARB RNF10 RXRA SIRT1 SKP1 SRSF4 SRSF5 SRSF6 THRB TP53 UBC UBE2I USF1 USF2
Entrez ID		9921	10891
HPRD ID		11496	05155
Ensembl ID		ENSG00000022840	ENSG00000109819
Uniprot IDs		A0A024RBP0 Q8N5U6	D6RBF3 Q9UBK2
PDB IDs		Not available	1XB7 3B1M 3CS8 3D24 3U9Q 3V9T 3V9V 4QJR 4QK4 5Q0I 5TWO 5UNJ 5Z5S 5Z6S 6AD9 6FZF 6FZP 6IZM 6IZN 6K0T 6KXX 6KXY 6LN4 6MS7 6NWK 6NWL 6T1V 6W9K 6W9L 7E2E 7KHT 7PRV 7PRW 7PRX 8BF1 8DK4 9F7W 9F7X
GO Terms Enriched among Interactors		RNA Binding RNA Processing RNA Metabolic Process Nucleic Acid Metabolic Process MRNA Metabolic Process Nucleic Acid Binding Nucleobase-containing Compound Metabolic Process MRNA Processing Nucleus RNA Splicing Macromolecule Metabolic Process Nucleoplasm Nucleolus RNA Splicing, Via Transesterification Reactions Regulation Of MRNA Metabolic Process MRNA Splicing, Via Spliceosome RNA Helicase Activity Helicase Activity Protein-RNA Complex Assembly Post-transcriptional Regulation Of Gene Expression ATP Binding RNA Catabolic Process Double-stranded RNA Binding Catalytic Step 2 Spliceosome Regulation Of Gene Expression Nuclear Speck Regulation Of Macromolecule Biosynthetic Process ATP Hydrolysis Activity Cytoplasm Regulation Of RNA Splicing Regulation Of Translation Negative Regulation Of Gene Expression Regulation Of MRNA Processing RRNA Metabolic Process Spliceosomal Complex Nucleotide Binding MRNA Binding Regulation Of MRNA Stability Regulation Of RNA Stability RRNA Processing Regulation Of Macromolecule Metabolic Process Nucleocytoplasmic Transport Nuclear Transport PiRNA Processing Ribonucleoprotein Complex Regulation Of Primary Metabolic Process Nucleobase-containing Compound Catabolic Process Negative Regulation Of Macromolecule Metabolic Process Negative Regulation Of Metabolic Process Regulation Of MRNA Splicing, Via Spliceosome	Positive Regulation Of Transcription By RNA Polymerase II Nuclear Receptor Activity Positive Regulation Of RNA Biosynthetic Process Positive Regulation Of DNA-templated Transcription Positive Regulation Of RNA Metabolic Process Positive Regulation Of Macromolecule Biosynthetic Process Regulation Of RNA Metabolic Process Positive Regulation Of Nucleobase-containing Compound Metabolic Process Positive Regulation Of Biosynthetic Process Regulation Of Transcription By RNA Polymerase II Nucleoplasm Regulation Of Nucleobase-containing Compound Metabolic Process Positive Regulation Of Macromolecule Metabolic Process Nuclear Receptor-mediated Signaling Pathway Intracellular Receptor Signaling Pathway Regulation Of DNA-templated Transcription Regulation Of RNA Biosynthetic Process Positive Regulation Of Metabolic Process Regulation Of Gene Expression Regulation Of Macromolecule Biosynthetic Process Negative Regulation Of RNA Metabolic Process Regulation Of Primary Metabolic Process Negative Regulation Of Nucleobase-containing Compound Metabolic Process Sequence-specific DNA Binding Hormone-mediated Signaling Pathway Nucleus Regulation Of Macromolecule Metabolic Process Regulation Of Metabolic Process RNA Polymerase II Cis-regulatory Region Sequence-specific DNA Binding DNA-binding Transcription Factor Activity Chromatin Negative Regulation Of Macromolecule Metabolic Process Steroid Hormone Receptor Signaling Pathway Nuclear Receptor-mediated Steroid Hormone Signaling Pathway Negative Regulation Of Transcription By RNA Polymerase II Negative Regulation Of DNA-templated Transcription Negative Regulation Of Macromolecule Biosynthetic Process Negative Regulation Of RNA Biosynthetic Process Negative Regulation Of Biosynthetic Process Negative Regulation Of Metabolic Process Nuclear Steroid Receptor Activity DNA Binding DNA-binding Transcription Activator Activity, RNA Polymerase II-specific DNA-binding Transcription Factor Activity, RNA Polymerase II-specific Intracellular Signal Transduction Rhythmic Process Estrogen Response Element Binding Transcription Coactivator Binding Peroxisome Proliferator Activated Receptor Signaling Pathway Nuclear Vitamin D Receptor Binding