CCNH and ERCC3

Number of citations: 73 (PubMedID 35831314)
Data Source: BioGRID (biochemical), HPRD (in vitro, in vivo)

		CCNH	ERCC3
Name		cyclin H	ERCC excision repair 3, TFIIH core complex helicase subunit
Structure
GO Annotations	Cellular Component	Cyclin-dependent Protein Kinase Holoenzyme Complex Transcription Factor TFIIH Core Complex Male Germ Cell Nucleus Nucleus Nucleoplasm Transcription Factor TFIIH Holo Complex CAK-ERCC2 Complex Transcription Factor TFIIK Complex	Nucleotide-excision Repair Factor 3 Complex Transcription Factor TFIIH Core Complex Nucleus Nucleoplasm Transcription Factor TFIID Complex Transcription Factor TFIIH Holo Complex Transcription Preinitiation Complex
	Molecular Function	Protein Binding RNA Polymerase II General Transcription Initiation Factor Activity Kinase Activity Cyclin-dependent Protein Serine/threonine Kinase Regulator Activity	Nucleotide Binding DNA Binding DNA Helicase Activity Damaged DNA Binding Helicase Activity Protein Binding ATP Binding Hydrolase Activity Isomerase Activity ATP Hydrolysis Activity 3'-5' DNA Helicase Activity Promoter-specific Chromatin Binding
	Biological Process	DNA-templated Transcription Regulation Of Transcription By RNA Polymerase II Transcription Initiation At RNA Polymerase II Promoter Protein Stabilization Regulation Of G1/S Transition Of Mitotic Cell Cycle	DNA Topological Change DNA Repair Transcription-coupled Nucleotide-excision Repair Nucleotide-excision Repair Transcription By RNA Polymerase II Transcription Initiation At RNA Polymerase II Promoter Transcription Elongation By RNA Polymerase II Apoptotic Process DNA Damage Response Response To Oxidative Stress Intracellular Protein Localization Response To UV UV Protection Hair Cell Differentiation Positive Regulation Of Apoptotic Process Embryonic Organ Development Regulation Of Mitotic Cell Cycle Phase Transition
Pathways		Formation of RNA Pol II elongation complex Formation of the Early Elongation Complex Formation of HIV elongation complex in the absence of HIV Tat Formation of the HIV-1 Early Elongation Complex RNA Pol II CTD phosphorylation and interaction with CE during HIV infection HIV Transcription Initiation RNA Polymerase II HIV Promoter Escape Transcription of the HIV genome Formation of HIV-1 elongation complex containing HIV-1 Tat Tat-mediated elongation of the HIV-1 transcript NoRC negatively regulates rRNA expression Formation of Incision Complex in GG-NER RNA Polymerase II Pre-transcription Events Formation of TC-NER Pre-Incision Complex Transcription-Coupled Nucleotide Excision Repair (TC-NER) Dual incision in TC-NER Gap-filling DNA repair synthesis and ligation in TC-NER TP53 Regulates Transcription of DNA Repair Genes Cyclin E associated events during G1/S transition Cyclin D associated events in G1 Cyclin A/B1/B2 associated events during G2/M transition Cyclin A:Cdk2-associated events at S phase entry mRNA Capping RNA Polymerase I Transcription Initiation RNA Polymerase I Promoter Escape RNA Polymerase II Promoter Escape RNA Polymerase II Transcription Pre-Initiation And Promoter Opening RNA Polymerase I Transcription Termination RNA Polymerase II Transcription Initiation RNA Polymerase II Transcription Elongation RNA Polymerase II Transcription Initiation And Promoter Clearance RNA Pol II CTD phosphorylation and interaction with CE RUNX1 regulates transcription of genes involved in differentiation of HSCs	Formation of RNA Pol II elongation complex Formation of the Early Elongation Complex Formation of HIV elongation complex in the absence of HIV Tat Formation of the HIV-1 Early Elongation Complex RNA Pol II CTD phosphorylation and interaction with CE during HIV infection HIV Transcription Initiation RNA Polymerase II HIV Promoter Escape Transcription of the HIV genome Formation of HIV-1 elongation complex containing HIV-1 Tat Tat-mediated elongation of the HIV-1 transcript NoRC negatively regulates rRNA expression Formation of Incision Complex in GG-NER Dual Incision in GG-NER RNA Polymerase II Pre-transcription Events Formation of TC-NER Pre-Incision Complex Transcription-Coupled Nucleotide Excision Repair (TC-NER) Dual incision in TC-NER Gap-filling DNA repair synthesis and ligation in TC-NER TP53 Regulates Transcription of DNA Repair Genes mRNA Capping RNA Polymerase I Transcription Initiation RNA Polymerase I Promoter Escape RNA Polymerase II Promoter Escape RNA Polymerase II Transcription Pre-Initiation And Promoter Opening RNA Polymerase I Transcription Termination RNA Polymerase II Transcription Initiation RNA Polymerase II Transcription Elongation RNA Polymerase II Transcription Initiation And Promoter Clearance RNA Pol II CTD phosphorylation and interaction with CE
Diseases		None	Disorders of nucleotide excision repair, including: Xeroderma pigmentosum (XP); Cockayne syndrome (CS); UV-sensitive syndrome (UVS); Trichothiodystrophy (TTD); Cerebro-oculo-facio-skeletal syndrome (COFS); XFE progeroid syndrome
GWAS		Adult body size ( 32376654 ) Bipolar disorder lithium response (continuous) or schizophrenia ( 29121268 ) Diastolic blood pressure ( 27841878 ) Fasting glucose ( 34074324 ) Initial pursuit acceleration ( 29064472 ) Macular thickness ( 30535121 ) Major depressive disorder ( 23377640 ) Prostate cancer aggressiveness ( 25939597 ) Pulse pressure ( 27841878 ) Systolic blood pressure ( 27841878 )	No GWAS studies recorded
Interacting Genes		48 interacting genes: AR BLZF1 CALCOCO2 CCDC170 CCDC33 CCNC CCT4 CDK2 CDK20 CDK3 CDK6 CDK7 CDK8 CSNK2B CTBP2 DUSP12 ERCC3 ESR1 FUBP1 GANAB GOLGA2 GRIPAP1 GTF2E2 GTF2H1 KLC3 MCM7 MCRS1 MTA1 MTMR7 NDC80 NEDD4 PICK1 POLR2A POLR2B PPFIA1 PSMA1 RARB RHOH SFN SORBS3 SSX2IP SUPT5H TCF4 TP53 TRIM8 TRIML2 ZNF655 ZNRD2	38 interacting genes: ADAMTSL4 AR BCR BLZF1 CCNC CCNH CDC42 CDK7 CDK8 CEP70 CEP76 E2F1 ERCC2 GOLGA2 GTF2E1 GTF2E2 GTF2H1 GTF2H2 GTF2H3 GTF2H4 GTF2H5 KPNA3 MAGED1 MCF2 MNAT1 MSANTD2 PSMC5 RAD52 ROPN1 SNW1 SRPK2 TP53 TRIM14 TRIM27 TUBG1 XIAP XPC ZSCAN1
Entrez ID		902	2071
HPRD ID		09059	00593
Ensembl ID		ENSG00000134480	ENSG00000163161
Uniprot IDs		A0A2R8YEM2 P51946	B3KRG2 B3KTH1 P19447
PDB IDs		1JKW 1KXU 6O9L 6XBZ 6XD3 7B5O 7B5Q 7EGB 7EGC 7ENA 7ENC 7LBM 7NVR 8BVW 8BYQ 8GXQ 8GXS 8ORM 8P6V 8P6W 8P6X 8P6Y 8P6Z 8P70 8P71 8P72 8P73 8P74 8P75 8P76 8P77 8P78 8P79 8PLZ 8PYR 8S0R 8S0T	4ERN 5IVW 5IY6 5IY7 5IY8 5IY9 5OF4 6NMI 6O9L 6O9M 6RO4 7AD8 7EGB 7EGC 7ENA 7ENC 7LBM 7NVR 7NVV 7NVW 7NVX 7NVY 7NVZ 7NW0 8BVW 8BYQ 8EBS 8EBT 8EBU 8EBV 8EBW 8EBX 8EBY 8GXQ 8GXS 8WAK 8WAL 8WAN 8WAO 8WAP 8WAQ 8WAR 8WAS
GO Terms Enriched among Interactors		Cyclin-dependent Protein Serine/threonine Kinase Activity Cyclin-dependent Protein Kinase Holoenzyme Complex DNA-templated Transcription Transcription By RNA Polymerase II Nucleoplasm Nucleus DNA Damage Response Cyclin Binding Regulation Of DNA-templated Transcription Regulation Of RNA Biosynthetic Process Hormone-mediated Signaling Pathway Regulation Of Nucleobase-containing Compound Metabolic Process Nucleobase-containing Compound Biosynthetic Process Regulation Of Mitotic Cell Cycle Phase Transition Transcription Factor TFIIH Core Complex Transcription Factor TFIIH Holo Complex Positive Regulation Of Macromolecule Biosynthetic Process Transcription Elongation By RNA Polymerase II Transcription Initiation At RNA Polymerase II Promoter Protein Binding Negative Regulation Of Transcription By RNA Polymerase II Positive Regulation Of Biosynthetic Process Regulation Of RNA Metabolic Process Regulation Of Primary Metabolic Process Regulation Of Transcription By RNA Polymerase II DNA-templated Transcription Elongation RNA-directed RNA Polymerase Activity RNA-templated Transcription Cytoplasm Regulation Of Cell Cycle Regulation Of Cell Cycle Phase Transition Positive Regulation Of RNA Biosynthetic Process Positive Regulation Of DNA-templated Transcription Cell Division Regulation Of Macromolecule Biosynthetic Process Positive Regulation Of Macromolecule Metabolic Process Regulation Of Macromolecule Metabolic Process G0 To G1 Transition TFIIB-class Transcription Factor Binding Chromatin Binding Positive Regulation Of Metabolic Process Viral Process Negative Regulation Of Stem Cell Proliferation DNA-templated Transcription Initiation Positive Regulation Of Nucleobase-containing Compound Metabolic Process Regulation Of Mitotic Cell Cycle CKM Complex Regulation Of Metabolic Process Positive Regulation Of RNA Metabolic Process DNA Repair	Transcription Factor TFIIH Core Complex Transcription Factor TFIIH Holo Complex Transcription Initiation At RNA Polymerase II Promoter Nucleotide-excision Repair DNA-templated Transcription Initiation Transcription Factor TFIID Complex DNA-templated Transcription CAK-ERCC2 Complex RNA Polymerase II General Transcription Initiation Factor Activity DNA Damage Response Transcription By RNA Polymerase II Nucleobase-containing Compound Biosynthetic Process Transcription Factor TFIIK Complex DNA Repair Core TFIIH Complex Portion Of Holo TFIIH Complex RNA Metabolic Process Nucleoplasm Cyclin-dependent Protein Kinase Holoenzyme Complex Nucleic Acid Metabolic Process Nucleus Regulation Of Cell Cycle DNA Metabolic Process Macromolecule Biosynthetic Process Nucleobase-containing Compound Metabolic Process Cellular Response To Stress Transcription Factor TFIIE Complex Regulation Of Nucleobase-containing Compound Metabolic Process Macromolecule Metabolic Process Regulation Of RNA Metabolic Process Regulation Of Mitotic Cell Cycle Phase Transition Intrinsic Apoptotic Signaling Pathway By P53 Class Mediator Regulation Of DNA-templated Transcription Regulation Of RNA Biosynthetic Process Regulation Of Mitotic Cell Cycle Regulation Of Cell Cycle Process Regulation Of G1/S Transition Of Mitotic Cell Cycle Protein-containing Complex Positive Regulation Of RNA Biosynthetic Process Positive Regulation Of DNA-templated Transcription Regulation Of Primary Metabolic Process Positive Regulation Of Macromolecule Biosynthetic Process CKM Complex Regulation Of Cell Cycle Phase Transition Regulation Of Cell Cycle G1/S Phase Transition Positive Regulation Of Nucleobase-containing Compound Metabolic Process Signal Transduction By P53 Class Mediator Positive Regulation Of Biosynthetic Process Positive Regulation Of RNA Metabolic Process Transcription Elongation By RNA Polymerase I Regulation Of Macromolecule Biosynthetic Process