UPF1 and EIF3B

Number of citations of the paper that reports this interaction (PMID 18423202)
82

Data Source:
BioGRID (affinity chromatography technology)
HPRD (in vivo)

		UPF1	EIF3B
Gene Name		UPF1 regulator of nonsense transcripts homolog (yeast)	eukaryotic translation initiation factor 3, subunit B
Image
Gene Ontology Annotations	Cellular Component	Chromatin Cytoplasmic MRNA Processing Body Nucleus Nucleoplasm Cytoplasm Cytosol Exon-exon Junction Complex Supraspliceosomal Complex	Nucleoplasm Cytoplasm Cytosol Eukaryotic Translation Initiation Factor 3 Complex Eukaryotic 43S Preinitiation Complex Eukaryotic 48S Preinitiation Complex Extracellular Vesicular Exosome Eukaryotic Translation Initiation Factor 3 Complex, EIF3m
	Molecular Function	DNA Binding Chromatin Binding RNA Binding ATP-dependent RNA Helicase Activity Helicase Activity Protein Binding ATP Binding Zinc Ion Binding Poly(A) RNA Binding	Nucleotide Binding Translation Initiation Factor Activity Protein Binding Translation Initiation Factor Binding Protein Complex Scaffold
	Biological Process	Nuclear-transcribed MRNA Catabolic Process, Nonsense-mediated Decay Nuclear-transcribed MRNA Catabolic Process DNA Replication DNA Repair MRNA Export From Nucleus Regulation Of Translational Termination Dosage Compensation By Inactivation Of X Chromosome Gene Expression Histone MRNA Catabolic Process	Formation Of Translation Preinitiation Complex Translation Translational Initiation Regulation Of Translational Initiation Gene Expression Cellular Protein Metabolic Process
Pathways		Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) Nonsense-Mediated Decay (NMD) Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)	Ribosomal scanning and start codon recognition Translation initiation complex formation Formation of the ternary complex, and subsequently, the 43S complex GTP hydrolysis and joining of the 60S ribosomal subunit Translation Eukaryotic Translation Initiation Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S Formation of a pool of free 40S subunits Cap-dependent Translation Initiation L13a-mediated translational silencing of Ceruloplasmin expression
Drugs
Diseases
GWAS
Protein-Protein Interactions		31 interactors: ABHD16A ACSS2 ATR CSNK2B DCP1A DCP2 DXO EIF3A EIF3B EIF4A3 EXOSC2 EXOSC4 GNPTG GSPT2 HIRA LSM8 NADSYN1 NDRG1 NDUFB10 PLEKHA5 PLEKHB2 POLR2A RHOXF2 RPRD2 SMG1 SMG5 STAU1 UPF2 UPF3A UPF3B XRN1	8 interactors: BRCA1 EIF3A EIF3G EIF3I EIF3J EIF4G1 IL2RB UPF1
Entrez ID		5976	8662
HPRD ID		03254	06795
Ensembl ID		ENSG00000005007	ENSG00000106263
Uniprot IDs		Q92900	P55884
PDB IDs		2GJK 2GK6 2GK7 2IYK 2WJV 2WJY 2XZO 2XZP	2KRB 2NLW
Enriched GO Terms of Interacting Partners?		Nuclear-transcribed MRNA Catabolic Process MRNA Catabolic Process RNA Catabolic Process MRNA Metabolic Process Aromatic Compound Catabolic Process Nuclear-transcribed MRNA Catabolic Process, Nonsense-mediated Decay Cellular Macromolecule Catabolic Process RNA Localization Nuclear-transcribed MRNA Catabolic Process, Deadenylation-dependent Decay Nuclear MRNA Surveillance Exonucleolytic Nuclear-transcribed MRNA Catabolic Process Involved In Deadenylation-dependent Decay Nuclear-transcribed MRNA Catabolic Process, Exonucleolytic RNA Surveillance MRNA Transport RNA Transport Gene Expression Catabolic Process Nucleobase-containing Compound Metabolic Process RNA Metabolic Process Heterocycle Metabolic Process Cellular Aromatic Compound Metabolic Process Histone MRNA Catabolic Process Cellular Nitrogen Compound Metabolic Process Nuclear Export Nucleocytoplasmic Transport Nuclear Transport Nitrogen Compound Metabolic Process MRNA Export From Nucleus RNA Export From Nucleus Histone MRNA Metabolic Process RNA Phosphodiester Bond Hydrolysis, Exonucleolytic Cellular Metabolic Process Cytoplasmic Transport Posttranscriptional Regulation Of Gene Expression Regulation Of Translation RRNA Metabolic Process Nucleic Acid Phosphodiester Bond Hydrolysis Ribonucleoprotein Complex Biogenesis Ribosome Biogenesis Intracellular MRNA Localization RRNA Catabolic Process Positive Regulation Of Translation MRNA Splicing, Via Spliceosome RNA Splicing, Via Transesterification Reactions Maturation Of 5.8S RRNA NcRNA Metabolic Process RNA 3'-end Processing RNA Phosphodiester Bond Hydrolysis Formation Of Translation Preinitiation Complex RRNA Processing	Regulation Of Translational Initiation Formation Of Translation Preinitiation Complex Regulation Of Translation Posttranscriptional Regulation Of Gene Expression Translational Initiation Ribonucleoprotein Complex Assembly Regulation Of Cellular Protein Metabolic Process Regulation Of Protein Metabolic Process Translation Dosage Compensation By Inactivation Of X Chromosome Ribonucleoprotein Complex Biogenesis Dosage Compensation Cytoplasmic Translation Cellular Macromolecule Biosynthetic Process Macromolecule Biosynthetic Process Cellular Macromolecular Complex Assembly Biosynthetic Process Regulation Of Gene Expression Cellular Component Assembly Gene Expression Positive Regulation Of Histone H4-K20 Methylation Positive Regulation Of Histone H4-K16 Acetylation Nuclear-transcribed MRNA Catabolic Process, Nonsense-mediated Decay Positive Regulation Of Histone H3-K9 Acetylation Nuclear Export Cellular Protein Metabolic Process Cellular Response To Cytokine Stimulus Positive Regulation Of Histone H4 Acetylation Negative Regulation Of Histone H3-K4 Methylation Nuclear-transcribed MRNA Catabolic Process MRNA Catabolic Process Interleukin-2-mediated Signaling Pathway Response To Cytokine RNA Catabolic Process Formation Of Cytoplasmic Translation Initiation Complex Cellular Response To Indole-3-methanol Regulation Of Metabolic Process Negative Regulation Of Centriole Replication Regulation Of Gene Expression, Epigenetic Protein K6-linked Ubiquitination Negative Regulation Of Histone H3-K9 Methylation Positive Regulation Of Histone H3-K9 Methylation Mature Ribosome Assembly Regulation Of Histone H3-K9 Acetylation Protein Metabolic Process Ribosomal Subunit Export From Nucleus Histone MRNA Catabolic Process Nucleocytoplasmic Transport Cytoplasmic Translational Initiation Nuclear Transport
Tagcloud ?		aav9 adeno als amyotrophic cord decay empty exerts forelimb green helps implicate mycupf1 nmd nonsense otherwise paralysis quadriplegic recapitulate reproducible respective spinal tdp titrated transactive twofold upframeshift validate vector	attenuation b3 cardiovirulence coxsackievirus cvb3 decisive diagnomx diagnosticpathology eif4b eif4g eu extrapolating ires myocarditis neurovirulence organized p116 p220 p80 playing poliovirus reinforce ribosome sabin sabin3 slide u473 virtual www
Tagcloud (Difference) ?		aav9 adeno als amyotrophic cord decay empty exerts forelimb green helps implicate mycupf1 nmd nonsense otherwise paralysis quadriplegic recapitulate reproducible respective spinal tdp titrated transactive twofold upframeshift validate vector	attenuation b3 cardiovirulence coxsackievirus cvb3 decisive diagnomx diagnosticpathology eif4b eif4g eu extrapolating ires myocarditis neurovirulence organized p116 p220 p80 playing poliovirus reinforce ribosome sabin sabin3 slide u473 virtual www
Tagcloud (Intersection) ?