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YBX1 and SMU1
Number of citations of the paper that reports this interaction (PubMedID
22365833
)
0
Data Source:
BioGRID
(two hybrid)
YBX1
SMU1
Description
Y-box binding protein 1
SMU1 DNA replication regulator and spliceosomal factor
Image
GO Annotations
Cellular Component
P-body
Extracellular Region
Nucleus
Nucleoplasm
U12-type Spliceosomal Complex
Cytoplasm
Endoplasmic Reticulum
Cytosol
Plasma Membrane
Cytoplasmic Stress Granule
Synapse
Extracellular Exosome
CRD-mediated MRNA Stability Complex
Histone Pre-mRNA 3'end Processing Complex
Ribonucleoprotein Complex
Nucleus
Nucleoplasm
Cytoplasm
Nuclear Speck
U2-type Precatalytic Spliceosome
Precatalytic Spliceosome
Molecular Function
Nucleic Acid Binding
DNA Binding
Chromatin Binding
Double-stranded DNA Binding
Single-stranded DNA Binding
RNA Binding
MRNA Binding
Protein Binding
MiRNA Binding
GTPase Binding
C5-methylcytidine-containing RNA Reader Activity
Sequence-specific Double-stranded DNA Binding
Protein Binding
Biological Process
Negative Regulation Of Transcription By RNA Polymerase II
In Utero Embryonic Development
Regulation Of DNA-templated Transcription
MRNA Processing
RNA Splicing
Epidermis Development
Regulation Of Gene Expression
Negative Regulation Of Translation
Positive Regulation Of Transcription By RNA Polymerase II
MRNA Stabilization
Embryonic Morphogenesis
RNA Transport
TRNA Transport
Negative Regulation Of Striated Muscle Cell Differentiation
Positive Regulation Of Cell Division
CRD-mediated MRNA Stabilization
Cellular Response To Interleukin-7
Negative Regulation Of Nuclear-transcribed MRNA Catabolic Process, Deadenylation-dependent Decay
Protein Localization To Cytoplasmic Stress Granule
MiRNA Transport
Positive Regulation Of Cytoplasmic Translation
Negative Regulation Of Cellular Senescence
Regulation Of Alternative MRNA Splicing, Via Spliceosome
MRNA Splicing, Via Spliceosome
MRNA Processing
RNA Splicing
Pathways
SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway
Processing of Capped Intron-Containing Pre-mRNA
Interferon gamma signaling
Noncanonical activation of NOTCH3
mRNA Splicing - Major Pathway
Drugs
Diseases
GWAS
Aspartate aminotransferase levels (
33547301
)
Gut microbiota (bacterial taxa, hurdle binary method) (
32572223
)
Interacting Genes
125 interacting genes:
ACTA2
AKT1
ANKRD2
APBB1
CALM1
CASP8
CEBPA
CSNK2A1
CTCF
DANCR
DUX4
FBXO33
FMR1
FUS
GSK3B
HABP4
HLA-C
HNRNPD
HNRNPK
HOXC-AS3
IL7R
IREB2
IRF1
JAM2
LCP2
LSM3
MAPK1
MIR1-1
MIR1-2
MIR106A
MIR106B
MIR107
MIR10B
MIR122
MIR128-1
MIR128-2
MIR138-1
MIR138-2
MIR140
MIR141
MIR143
MIR145
MIR155
MIR15A
MIR15B
MIR16-1
MIR16-2
MIR17
MIR18A
MIR18B
MIR199A1
MIR199A2
MIR19A
MIR19B1
MIR19B2
MIR200A
MIR200B
MIR200C
MIR205
MIR206
MIR20A
MIR20B
MIR21
MIR214
MIR221
MIR222
MIR25
MIR29A
MIR29B1
MIR29B2
MIR29C
MIR31
MIR34A
MIR34B
MIR34C
MIR363
MIR429
MIR451A
MIR7-1
MIR7-2
MIR7-3
MIR9-1
MIR9-2
MIR9-3
MIR92A1
MIR92A2
MIR93
MIR98
MIRLET7A1
MIRLET7A2
MIRLET7A3
MIRLET7B
MIRLET7C
MIRLET7D
MIRLET7E
MIRLET7F1
MIRLET7F2
MIRLET7G
MIRLET7I
MYC
MYCN
NEIL3
NFYB
OGT
PCBP2
PCNA
PFKFB4
PRPF40A
PURA
RBBP6
RNF10
RPS6KA1
RPS6KA3
SLC6A4
SMAD3
SMU1
SREK1
SRSF9
TFAP2A
TP53
TRAF6
VEGFA
VPS35
WEE2-AS1
ZBTB7A
12 interacting genes:
CD2BP2
CEBPA
CERT1
H2BC21
LSM4
LSM8
MRFAP1
MSS51
RASSF10
TLX3
UBC
YBX1
Entrez ID
4904
55234
HPRD ID
01095
11588
Ensembl ID
ENSG00000065978
ENSG00000122692
Uniprot IDs
P67809
A0MNN4
Q2TAY7
PDB IDs
1H95
5YTS
5YTT
5YTV
5YTX
6A6L
6KTC
6KUG
6LMR
6LMS
5O9Z
6AHD
6Q8F
6Q8I
6Q8J
8H6K
8H6L
8QO9
8QZS
Enriched GO Terms of Interacting Partners
?
MiRNA-mediated Post-transcriptional Gene Silencing
RISC Complex
Regulatory NcRNA-mediated Post-transcriptional Gene Silencing
Post-transcriptional Gene Silencing
Regulatory NcRNA-mediated Gene Silencing
MRNA Base-pairing Post-transcriptional Repressor Activity
Post-transcriptional Regulation Of Gene Expression
Negative Regulation Of Gene Expression
Negative Regulation Of Macromolecule Biosynthetic Process
Negative Regulation Of Biosynthetic Process
MRNA 3'-UTR Binding
Negative Regulation Of Macromolecule Metabolic Process
Negative Regulation Of Metabolic Process
MiRNA-mediated Gene Silencing By Inhibition Of Translation
Regulation Of Gene Expression
Regulation Of Macromolecule Biosynthetic Process
Negative Regulation Of Translation
MiRNA-mediated Gene Silencing By MRNA Destabilization
Regulation Of Macromolecule Metabolic Process
Extracellular Vesicle
Regulation Of Metabolic Process
Regulation Of Translation
MRNA Destabilization
RNA Destabilization
Positive Regulation Of MRNA Catabolic Process
Negative Regulation Of Developmental Process
Regulation Of MRNA Stability
Negative Regulation Of Protein Metabolic Process
Negative Regulation Of Cell Migration
Negative Regulation Of Cell Motility
Regulation Of RNA Stability
Negative Regulation Of Multicellular Organismal Process
Regulation Of MRNA Metabolic Process
Negative Regulation Of Locomotion
Negative Regulation Of Vascular Endothelial Growth Factor Production
Positive Regulation Of MRNA Metabolic Process
Negative Regulation Of Angiogenesis
Regulation Of Developmental Process
Negative Regulation Of Vasculature Development
Regulation Of Angiogenesis
Regulation Of Vasculature Development
Negative Regulation Of Cytokine Production
Regulation Of Blood Vessel Endothelial Cell Migration
Negative Regulation Of Transforming Growth Factor Beta Receptor Signaling Pathway
Regulation Of Cell Migration
Regulation Of Cellular Response To Growth Factor Stimulus
Regulation Of Transforming Growth Factor Beta Receptor Signaling Pathway
Regulation Of Locomotion
Regulation Of Cell Motility
Regulation Of Protein Metabolic Process
U4/U6 X U5 Tri-snRNP Complex
Nucleoplasm
Lsm2-8 Complex
U6 SnRNP
U6 SnRNA Binding
RNA Splicing
MRNA Processing
Spliceosomal SnRNP Assembly
RNA Polymerase I Transcription Regulatory Region Sequence-specific DNA Binding
MRNA Metabolic Process
Intermembrane Sphingolipid Transfer
U2-type Precatalytic Spliceosome
Response To Vitamin B2
C/EBP Complex
Ceramide Transfer Activity
CHOP-C/EBP Complex
RNA Metabolic Process
P-body
RNA Processing
Ribonucleoprotein Complex
MiRNA Transport
ER To Golgi Ceramide Transport
Tagcloud
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Tagcloud (Difference)
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Tagcloud (Intersection)
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