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CALCOCO2 and LSM4
Number of citations of the paper that reports this interaction (PMID
16189514
)
699
Data Source:
HPRD
(two hybrid)
CALCOCO2
LSM4
Gene Name
calcium binding and coiled-coil domain 2
LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Image
No pdb structure
Gene Ontology Annotations
Cellular Component
Nucleus
Cytoplasm
Golgi Apparatus
Cytoskeleton
Membrane
Intracellular Membrane-bounded Organelle
Perinuclear Region Of Cytoplasm
Spliceosomal Complex
U6 SnRNP
Cytosol
Small Nuclear Ribonucleoprotein Complex
Molecular Function
Protein Binding
Protein Homodimerization Activity
Protein Binding
Poly(A) RNA Binding
Biological Process
Viral Process
Response To Interferon-gamma
Nuclear-transcribed MRNA Catabolic Process, Deadenylation-dependent Decay
MRNA Processing
RNA Splicing
Gene Expression
Exonucleolytic Nuclear-transcribed MRNA Catabolic Process Involved In Deadenylation-dependent Decay
Pathways
mRNA decay by 5' to 3' exoribonuclease
Deadenylation-dependent mRNA decay
Drugs
Diseases
GWAS
Protein-Protein Interactions
143 interactors:
ABLIM1
ADSL
AES
AKAP17A
AMMECR1
AP5B1
APEX2
ARHGEF39
ARHGEF5
ARNT2
BAHD1
BCL6B
BEX2
C20orf195
CBX8
CCDC185
CCDC33
CCNH
CEP57L1
CHCHD3
CPNE7
CWF19L2
DAXX
DAZAP2
DBNDD2
DCTN4
DCX
DDIT4L
DDX6
DOCK2
DUSP12
DUSP26
EEF1E1
ENKD1
EXOSC5
FAM107A
FAM161A
FAM168A
FAM189A2
FAM90A1
FARS2
FASTK
FBF1
FBXL18
FKBPL
FXR2
GABARAPL1
GABARAPL2
GATAD2B
GEMIN4
GIT2
GLYCTK
HDAC7
HOXB9
IKBKG
KANSL1
KAT7
KLHL42
LENG1
LGALS8
LIMS2
LITAF
LMF2
LMO2
LMO4
LNX1
LONRF1
LSM4
MAGOHB
MAVS
MCM10
METTL17
MID2
MOS
MTPAP
MVP
MXI1
MYO6
NAA10
NDN
NFU1
ORC5
PAPD4
PCGF1
PEF1
PEG10
PFDN5
PHF1
PIAS4
POLI
PPP1R18
PRKAB2
PRPF31
PSMA1
PSME4
PTBP1
PTBP2
RABL6
RB1CC1
RBM15
RHPN1
RIN1
RNF11
RPA2
RPL9
RPS27A
RTN4IP1
RTP5
SDCBP
SHC1
SLC15A3
SMARCD1
SMCP
SNRPB
SPATA24
SRI
STK16
TAX1BP1
TBC1D22B
TBK1
TBRG4
TCEB3B
TCL1A
TEKT3
TP53RK
TRAF2
TRAF4
TRAF6
UBAC2
UBB
UBC
VARS
VPS72
ZC2HC1C
ZNF101
ZNF205
ZNF337
ZNF408
ZNF426
ZNF451
ZNF564
ZNF581
ZNF638
20 interactors:
CALCOCO2
COX5B
IKZF1
L3MBTL3
LSM1
LSM7
LSM8
NMI
PLEKHA5
PSTPIP1
RHOXF2
SLC22A2
SMIM14
SMN1
SMU1
SNRPE
TOE1
TOP1
XRN1
ZBTB10
Entrez ID
10241
25804
HPRD ID
06846
06284
Ensembl ID
ENSG00000136436
ENSG00000130520
Uniprot IDs
Q13137
Q9Y4Z0
U3KQK1
PDB IDs
3VVV
3VVW
4GXL
4HAN
Enriched GO Terms of Interacting Partners
?
RNA Metabolic Process
Gene Expression
Nucleobase-containing Compound Metabolic Process
Heterocycle Metabolic Process
Cellular Aromatic Compound Metabolic Process
Cellular Nitrogen Compound Metabolic Process
RNA Biosynthetic Process
Transcription, DNA-templated
Regulation Of Nitrogen Compound Metabolic Process
Regulation Of Metabolic Process
Nitrogen Compound Metabolic Process
Cellular Macromolecule Biosynthetic Process
Regulation Of RNA Metabolic Process
Macromolecule Biosynthetic Process
Regulation Of Gene Expression
Regulation Of Transcription, DNA-templated
Regulation Of Nucleic Acid-templated Transcription
Regulation Of RNA Biosynthetic Process
I-kappaB Kinase/NF-kappaB Signaling
TRIF-dependent Toll-like Receptor Signaling Pathway
MyD88-independent Toll-like Receptor Signaling Pathway
Toll-like Receptor 3 Signaling Pathway
Cellular Metabolic Process
Negative Regulation Of Gene Expression
Negative Regulation Of Type I Interferon Production
MRNA Metabolic Process
Nucleotide-binding Oligomerization Domain Containing Signaling Pathway
Toll-like Receptor 4 Signaling Pathway
Biosynthetic Process
Regulation Of Transcription From RNA Polymerase II Promoter
JNK Cascade
Positive Regulation Of I-kappaB Kinase/NF-kappaB Signaling
Pattern Recognition Receptor Signaling Pathway
Innate Immune Response-activating Signal Transduction
Protein Modification By Small Protein Conjugation
Activation Of MAPK Activity
Activation Of Innate Immune Response
Positive Regulation Of Intracellular Signal Transduction
Regulation Of Signaling
Positive Regulation Of Protein Modification Process
Activation Of Protein Kinase Activity
Positive Regulation Of Protein Serine/threonine Kinase Activity
Regulation Of Type I Interferon Production
Activation Of NF-kappaB-inducing Kinase Activity
Protein Ubiquitination
Toll-like Receptor Signaling Pathway
Positive Regulation Of MAP Kinase Activity
G1/S Transition Of Mitotic Cell Cycle
Nucleotide-binding Domain, Leucine Rich Repeat Containing Receptor Signaling Pathway
Mitotic G1 DNA Damage Checkpoint
Histone MRNA Metabolic Process
Exonucleolytic Nuclear-transcribed MRNA Catabolic Process Involved In Deadenylation-dependent Decay
Nuclear-transcribed MRNA Catabolic Process, Exonucleolytic
MRNA Metabolic Process
RNA Splicing
Nuclear-transcribed MRNA Catabolic Process, Deadenylation-dependent Decay
MRNA Processing
RNA Metabolic Process
Histone MRNA Catabolic Process
RNA Splicing, Via Transesterification Reactions
Gene Expression
RNA Processing
Nucleobase-containing Compound Metabolic Process
Heterocycle Metabolic Process
Cellular Aromatic Compound Metabolic Process
Cellular Nitrogen Compound Metabolic Process
Nuclear-transcribed MRNA Catabolic Process
MRNA Catabolic Process
RNA Catabolic Process
Nitrogen Compound Metabolic Process
Spliceosomal SnRNP Assembly
MRNA Splicing, Via Spliceosome
Positive Regulation Of Neutrophil Differentiation
Spliceosomal Complex Assembly
Aromatic Compound Catabolic Process
NcRNA Metabolic Process
Cellular Metabolic Process
Nuclear MRNA Surveillance
Positive Regulation Of NK T Cell Differentiation
RNA Surveillance
Choline Transport
Deadenylation-dependent Decapping Of Nuclear-transcribed MRNA
Positive Regulation Of Granulocyte Differentiation
Ribonucleoprotein Complex Assembly
Chromatin Modification
RRNA Catabolic Process
Embryonic Cleavage
Erythrocyte Maturation
Tagcloud
?
ad
astrocytes
atg
atgs
autophagic
autophagy
avs
beneficial
brains
clear
clearance
enhancement
expected
facilitating
flux
hippocampal
impairment
lc3
localized
microglia
mouse
ndp52
p62
phosphorylated
plaques
reflecting
sqstm1
tau
vesicles
Tagcloud (Difference)
?
ad
astrocytes
atg
atgs
autophagic
autophagy
avs
beneficial
brains
clear
clearance
enhancement
expected
facilitating
flux
hippocampal
impairment
lc3
localized
microglia
mouse
ndp52
p62
phosphorylated
plaques
reflecting
sqstm1
tau
vesicles
Tagcloud (Intersection)
?