SND1 and LINC00624

Number of citations of the paper that reports this interaction (PubMedID 32869873)
0

Data Source:
BioGRID (unspecified method)

		SND1	LINC00624
Description		staphylococcal nuclease and tudor domain containing 1	long intergenic non-protein coding RNA 624
Image			No pdb structure
GO Annotations	Cellular Component	Nucleus Cytoplasm Cytosol Membrane RNAi Effector Complex Melanosome Extracellular Exosome Dense Body
	Molecular Function	Nucleic Acid Binding Transcription Coregulator Activity RNA Binding Nuclease Activity Endonuclease Activity RNA Endonuclease Activity Protein Binding Hydrolase Activity Cadherin Binding RISC Complex Binding
	Biological Process	Osteoblast Differentiation MRNA Catabolic Process Regulation Of Cell Cycle Process MiRNA Catabolic Process Regulatory NcRNA-mediated Gene Silencing
Pathways		Signaling by BRAF and RAF1 fusions
Drugs
Diseases
GWAS		Birth weight ( 31043758) Brain morphology (MOSTest) ( 32665545) Cadmium levels ( 26025379) Coffee consumption ( 31046077) Estimated glomerular filtration rate ( 31152163) Fruit consumption ( 32066663) General cognitive ability ( 29844566) General risk tolerance (MTAG) ( 30643258) Haemorrhoidal disease ( 33888516) Hemoglobin A1c levels ( 29403010) Number of sexual partners ( 30643258) Offspring birth weight ( 31043758) Subcortical volume (MOSTest) ( 32665545) Type 2 diabetes ( 23532257 32499647)	Body mass index and systolic blood pressure (bivariate analysis) ( 33539483) End-stage kidney disease ( 31178898) Heel bone mineral density x serum urate levels interaction ( 34046847) Height ( 31562340) Systolic blood pressure and diastolic blood pressure (bivariate analysis) ( 33539483) Waist circumference adjusted for body mass index ( 28552196)
Interacting Genes		28 interacting genes: APP CEBPA CREBBP CSNK2A1 ESR1 GTF2E1 GTF2E2 HOXA1 LINC00624 LZTR1 MAK MYB MYBL2 PDE4B PIM1 POLR2A PRPF8 PTGER4 RBPJ RNF10 RNU1-1 RNU2-1 RNU4-1 RNU5A-1 RNU6-1 STAT6 SUMO2 UBE2I	38 interacting genes: ACTA1 ACTC1 ADAR ALB CCT2 CCT4 CPNE3 DDX42 DDX5 EIF2AK2 FUBP3 G6PD H2BC18 HDAC6 HNRNPL HNRNPM HNRNPU HRNR ILF3 MCCC1 MCCC2 NONO PARP1 PTBP1 PTBP2 PTBP3 SERBP1 SFPQ SND1 SRRT STAU1 STAU2 TRIM28 TUBA1B TUBA1C UBAP2L YBX3 ZNF354C
Entrez ID		27044	100289211
HPRD ID		03714
Ensembl ID		ENSG00000197157	ENSG00000278811
Uniprot IDs		A0A140VK49 Q7KZF4
PDB IDs		2E6N 2HQE 2HQX 2O4X 3BDL 3OMC 3OMG 4QMG 5M9O 7KNW 7KNX
Enriched GO Terms of Interacting Partners?		Formation Of Quadruple SL/U4/U5/U6 SnRNP Spliceosomal Tri-snRNP Complex Assembly Positive Regulation Of Macromolecule Metabolic Process Positive Regulation Of RNA Biosynthetic Process Positive Regulation Of Biosynthetic Process Positive Regulation Of DNA-templated Transcription Positive Regulation Of Macromolecule Biosynthetic Process U4/U6 X U5 Tri-snRNP Complex Spliceosomal SnRNP Assembly Positive Regulation Of RNA Metabolic Process Positive Regulation Of Transcription By RNA Polymerase II Transcription Factor TFIIE Complex Positive Regulation Of Metabolic Process Regulation Of DNA-templated Transcription Regulation Of RNA Biosynthetic Process Positive Regulation Of Nucleobase-containing Compound Metabolic Process DNA-binding Transcription Activator Activity, RNA Polymerase II-specific Regulation Of RNA Metabolic Process Protein-RNA Complex Assembly Cellular Component Assembly Positive Regulation Of Cell Proliferation Involved In Heart Morphogenesis Regulation Of Nucleobase-containing Compound Metabolic Process Regulation Of Gene Expression Regulation Of Transcription By RNA Polymerase II Regulation Of Macromolecule Biosynthetic Process Transcription Coactivator Binding Nucleoplasm Negative Regulation Of Transcription By RNA Polymerase II Protein-containing Complex Assembly Cell Activation Involved In Immune Response U6 SnRNA Binding Response To Cytokine Response To Peptide Protein-containing Complex Organization DNA Binding Regulation Of MiRNA Transcription Mammary Gland Epithelial Cell Proliferation Regulation Of Calcium Ion Transmembrane Transport Via High Voltage-gated Calcium Channel Regulation Of Hematopoietic Stem Cell Proliferation Positive Regulation Of Protein Catabolic Process Regulation Of Stem Cell Proliferation Regulation Of Cell Proliferation Involved In Heart Morphogenesis Regulation Of MiRNA Metabolic Process Regulation Of Macromolecule Metabolic Process Transcription Factor Binding SUMO Transferase Activity U5 SnRNP Negative Regulation Of Nucleobase-containing Compound Metabolic Process Positive Regulation Of Gene Expression Cellular Response To Cytokine Stimulus	RNA Binding RNA Localization Nucleic Acid Binding Double-stranded RNA Binding MRNA Processing MRNA Binding Negative Regulation Of Macromolecule Biosynthetic Process MRNA Metabolic Process Negative Regulation Of Biosynthetic Process Regulation Of Viral Genome Replication Negative Regulation Of Metabolic Process Dendritic Transport Negative Regulation Of Macromolecule Metabolic Process Negative Regulation Of Gene Expression RNA Splicing Regulation Of Viral Life Cycle RNA Processing Cytoskeleton-dependent Intracellular Transport Alternative MRNA Splicing, Via Spliceosome Regulation Of Viral Process RNA Metabolic Process Cell Body Nucleus Axo-dendritic Transport Paraspeckles Regulation Of Macromolecule Biosynthetic Process Intracellular MRNA Localization Extracellular Exosome Regulation Of RNA Splicing Methylcrotonoyl-CoA Carboxylase Complex Methylcrotonoyl-CoA Carboxylase Activity Regulation Of Telomere Maintenance Via Telomere Lengthening Pre-mRNA Binding Cytoplasm Nucleobase-containing Compound Metabolic Process Nucleic Acid Metabolic Process Dendritic Transport Of Messenger Ribonucleoprotein Complex Anterograde Dendritic Transport Of Messenger Ribonucleoprotein Complex Regulation Of Alternative MRNA Splicing, Via Spliceosome Regulation Of Macromolecule Metabolic Process Regulation Of Gene Expression Regulation Of Metabolic Process Cellular Response To Chemical Stress Negative Regulation Of RNA Splicing Negative Regulation Of RNA Metabolic Process Regulatory NcRNA-mediated Gene Silencing Transport Along Microtubule Binding Of Sperm To Zona Pellucida Mesenchyme Migration ScaRNA Localization To Cajal Body
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