CDK5RAP1 and EXOSC3

Number of citations of the paper that reports this interaction (PubMedID 15231747)
47

Data Source:
BioGRID (two hybrid)
HPRD (two hybrid)

		CDK5RAP1	EXOSC3
Description		CDK5RAP1 mitochondrial tRNA methylthiotransferase	exosome component 3
Image		No pdb structure
GO Annotations	Cellular Component	Nucleoplasm Mitochondrion Mitochondrial Matrix Cytosol	Nuclear Exosome (RNase Complex) Cytoplasmic Exosome (RNase Complex) Exosome (RNase Complex) Euchromatin Nucleus Nucleoplasm Nucleolus Cytoplasm Cytosol Nucleolar Exosome (RNase Complex)
	Molecular Function	Catalytic Activity Transferase Activity Protein Kinase Binding Methylthiotransferase Activity TRNA-2-methylthio-N(6)-dimethylallyladenosine(37) Synthase Activity Metal Ion Binding Iron-sulfur Cluster Binding 4 Iron, 4 Sulfur Cluster Binding	3'-5'-RNA Exonuclease Activity RNA Binding RNA Exonuclease Activity Protein Binding
	Biological Process	TRNA Modification Brain Development TRNA Processing RNA Modification TRNA Methylthiolation Regulation Of Neuron Differentiation Negative Regulation Of Cyclin-dependent Protein Serine/threonine Kinase Activity Negative Regulation Of Cell Cycle Positive Regulation Of Translational Fidelity Regulation Of Protein Metabolic Process Positive Regulation Of Mitochondrial Translation Mitochondrial TRNA Modification	Exonucleolytic Trimming To Generate Mature 3'-end Of 5.8S RRNA From Tricistronic RRNA Transcript (SSU-rRNA, 5.8S RRNA, LSU-rRNA) Nuclear-transcribed MRNA Catabolic Process DNA Metabolic Process RRNA Processing RNA Processing RNA Catabolic Process MRNA Catabolic Process Gene Expression Regulation Of Gene Expression U4 SnRNA 3'-end Processing DNA Deamination Isotype Switching Positive Regulation Of Isotype Switching CUT Catabolic Process Nuclear Polyadenylation-dependent RRNA Catabolic Process TRAMP-dependent TRNA Surveillance Pathway Poly(A)-dependent SnoRNA 3'-end Processing
Pathways			ATF4 activates genes in response to endoplasmic reticulum stress mRNA decay by 3' to 5' exoribonuclease Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNA Tristetraprolin (TTP, ZFP36) binds and destabilizes mRNA KSRP (KHSRP) binds and destabilizes mRNA Major pathway of rRNA processing in the nucleolus and cytosol Nuclear RNA decay
Drugs
Diseases
GWAS		Diastolic blood pressure ( 30224653) Hip circumference adjusted for BMI ( 25673412 34021172) Mean corpuscular volume ( 32888494)
Interacting Genes		4 interacting genes: CDK5 CDK5R1 EXOSC3 EXOSC5	9 interacting genes: APP ATP5F1D CDK5RAP1 EXOSC4 EXOSC5 EXOSC9 KHSRP MPHOSPH6 TSR2
Entrez ID		51654	51010
HPRD ID		12189	16220
Ensembl ID		ENSG00000101391	ENSG00000107371
Uniprot IDs		A0A0S2Z592 A0A0S2Z5J9 Q53H36 Q96SZ6	Q9NQT5
PDB IDs			2NN6 6D6Q 6D6R 6H25 9G8M 9G8N 9G8O 9G8P
Enriched GO Terms of Interacting Partners?		Protein Kinase 5 Complex Poly(A)-dependent SnoRNA 3'-end Processing U4 SnRNA 3'-end Processing Cytoplasmic Exosome (RNase Complex) RNA Exonuclease Activity DNA Deamination Nucleolar Exosome (RNase Complex) Exosome (RNase Complex) Nuclear Exosome (RNase Complex) Sno(s)RNA Metabolic Process Layer Formation In Cerebral Cortex SnRNA 3'-end Processing Positive Regulation Of Protein Targeting To Membrane DNA Modification Ionotropic Glutamate Receptor Binding 3'-5'-RNA Exonuclease Activity Regulation Of Protein Targeting To Membrane SnRNA Processing Nuclear RNA Surveillance RNA Surveillance Regulation Of Dendritic Spine Morphogenesis Oligodendrocyte Differentiation Cyclin-dependent Protein Kinase Holoenzyme Complex SnRNA Metabolic Process Cerebellum Development Euchromatin Glial Cell Development Neuron Differentiation Positive Regulation Of Neuron Apoptotic Process Negative Regulation Of Calcium Ion-dependent Exocytosis Of Neurotransmitter Hippocampus Development Positive Regulation Of Presynaptic Cytosolic Calcium Concentration Ventral Spinal Cord Interneuron Fate Determination Type B Pancreatic Cell Fate Commitment Neuromuscular Junction RNA 3'-end Processing Microtubule Cytoskeleton Organization Acetylcholine Receptor Activator Activity Glial Cell Differentiation Cell Projection Pancreatic A Cell Fate Commitment Pancreatic PP Cell Fate Commitment Superior Olivary Nucleus Maturation Nuclear-transcribed MRNA Catabolic Process Regulation Of Developmental Process ErbB-2 Class Receptor Binding Negative Regulation Of Synaptic Plasticity Cerebellar Cortex Formation Epithelial Cell Development Spinal Cord Oligodendrocyte Cell Fate Specification	Exosome (RNase Complex) Nuclear Exosome (RNase Complex) Exoribonuclease Complex U4 SnRNA 3'-end Processing Nucleolar Exosome (RNase Complex) Nuclear MRNA Surveillance Cytoplasmic Exosome (RNase Complex) RNA Exonuclease Activity RRNA Catabolic Process RRNA Processing RNA Processing RRNA Metabolic Process SnRNA 3'-end Processing MRNA 3'-UTR AU-rich Region Binding 3'-5'-RNA Exonuclease Activity SnRNA Processing Nuclear RNA Surveillance RNA Surveillance SnRNA Metabolic Process RNA Metabolic Process Poly(A)-dependent SnoRNA 3'-end Processing RNA 3'-end Processing Nucleobase-containing Compound Metabolic Process DNA Deamination Negative Regulation Of Gene Expression Nuclear-transcribed MRNA Catabolic Process Sno(s)RNA Metabolic Process MRNA Catabolic Process Nucleic Acid Metabolic Process Maturation Of 5.8S RRNA DNA Modification RNA Binding Nucleolus Response To Copper Ion RNA Catabolic Process Negative Regulation Of Macromolecule Metabolic Process Macromolecule Metabolic Process Response To Other Organism MRNA Metabolic Process Negative Regulation Of Metabolic Process Amyloid-beta Complex Growth Cone Lamellipodium Regulation Of Response To Calcium Ion Amylin Binding Positive Regulation Of Toll Signaling Pathway Sebum Secreting Cell Proliferation Positive Regulation Of Translational Fidelity TRNA-2-methylthio-N(6)-dimethylallyladenosine(37) Synthase Activity Euchromatin Regulation Of Nitric Oxide Biosynthetic Process
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