IRF4 and YTHDC2

Number of citations of the paper that reports this interaction (PubMedID 21903422)
55

Data Source:
BioGRID (affinity chromatography technology, pull down)

		IRF4	YTHDC2
Description		interferon regulatory factor 4	YTH N6-methyladenosine RNA binding protein C2
Image
GO Annotations	Cellular Component	Chromatin Nucleosome Nucleus Nucleoplasm Cytoplasm Cytosol Membrane	Cytoplasm Endoplasmic Reticulum Ribonucleoprotein Granule Perinuclear Region Of Cytoplasm
	Molecular Function	Transcription Cis-regulatory Region Binding RNA Polymerase II Cis-regulatory Region Sequence-specific DNA Binding DNA-binding Transcription Factor Activity, RNA Polymerase II-specific Cis-regulatory Region Sequence-specific DNA Binding DNA-binding Transcription Activator Activity, RNA Polymerase II-specific DNA Binding DNA-binding Transcription Factor Activity Transcription Coactivator Activity Protein Binding Sequence-specific DNA Binding Sequence-specific Double-stranded DNA Binding	Nucleotide Binding Nucleic Acid Binding RNA Binding RNA Helicase Activity Helicase Activity Protein Binding ATP Binding ATP-dependent Activity, Acting On RNA Hydrolase Activity ATP Hydrolysis Activity 3'-5' RNA Helicase Activity RNA Polymerase Binding N6-methyladenosine-containing RNA Reader Activity
	Biological Process	Immune System Process Chromatin Remodeling Regulation Of DNA-templated Transcription Regulation Of Transcription By RNA Polymerase II Positive Regulation Of Interleukin-10 Production Positive Regulation Of Interleukin-13 Production Positive Regulation Of Interleukin-2 Production Positive Regulation Of Interleukin-4 Production Negative Regulation Of Toll-like Receptor Signaling Pathway T Cell Activation Defense Response To Protozoan Myeloid Dendritic Cell Differentiation Regulation Of T-helper Cell Differentiation Positive Regulation Of DNA-templated Transcription Positive Regulation Of Transcription By RNA Polymerase II Positive Regulation Of Multicellular Organismal Process T-helper 17 Cell Lineage Commitment Positive Regulation Of Cold-induced Thermogenesis	Spermatogenesis Spermatid Development Cell Differentiation Response To Tumor Necrosis Factor Host-mediated Activation Of Viral Genome Replication Oogenesis Oocyte Development Meiotic Cell Cycle Germline Cell Cycle Switching, Mitotic To Meiotic Cell Cycle Response To Interleukin-1
Pathways		Interleukin-4 and Interleukin-13 signaling Interferon gamma signaling Interferon alpha/beta signaling Nuclear events stimulated by ALK signaling in cancer Regulation of MITF-M-dependent genes involved in pigmentation	Nuclear RNA decay
Drugs
Diseases
GWAS		Age at first sexual intercourse ( 34211149) Aging traits (healthspan, parental lifespan or longevity) (multivariate analysis) ( 32678081) Alopecia areata ( 25608926) Asthma (childhood onset) ( 31036433 30929738) Asthma onset (childhood vs adult) ( 30929738) Autoimmune thyroid disease ( 32581359) B-cell malignancies (chronic lymphocytic leukemia, Hodgkin lymphoma or multiple myeloma) (pleiotropy) ( 28112199) Basal cell carcinoma ( 31174203 27539887) Black vs. blond hair color ( 18483556) Black vs. red hair color ( 18483556) Blond vs non-blond hair color ( 26184321) Blond vs. brown/black hair color ( 30531825) Brown vs. black hair color ( 30531825) Brown vs. non-brown hair color ( 26184321) Celiac disease ( 22057235 20190752) Chronic lymphocytic leukemia ( 28165464 26956414 23770605 24292274 18758461) Crohn's disease ( 26192919) Cutaneous squamous cell carcinoma ( 27424798 32041948) Eosinophil count ( 32888494) Eosinophil percentage of white cells ( 32888494) Epstein-Barr virus EA-D antibody levels ( 33204752) Eye color ( 20585627 30664655) Eye color (brightness) ( 30664655) Eye color traits ( 30166351) Facial pigmentation ( 25705849) Feeling nervous ( 29500382) Freckles ( 17952075) Freckling ( 20585627) Hair color ( 30664655 20585627 29662168 23548203 26926045) Hair greying ( 26926045) Hair morphology traits ( 30166351) Hematology traits ( 23303382) IgA nephropathy ( 32912934) Inflammatory bowel disease ( 26192919) Keratinocyte cancer (MTAG) ( 31174203) Light vs. dark hair color ( 26184321) Limited cutaneous systemic scleroderma ( 29293537) Low tan response ( 29739929) Lung adenocarcinoma ( 28604730) Lung cancer in ever smokers ( 28604730) Lymphocyte count ( 27863252 32888494) Lymphocyte percentage of white cells ( 32888494) Male-pattern baldness ( 27182965 29146897 28196072) Medication use (thyroid preparations) ( 31015401) Melanoma ( 28212542) Membranous nephropathy ( 32231244) Monobrow ( 27182965) Monocyte percentage of white cells ( 32888494) Neutrophil percentage of white cells ( 32888494) Nevus count ( 30429480) Non-melanoma skin cancer ( 29739929 23548203) Progressive supranuclear palsy ( 21685912) Psoriasis ( 25903422 23143594 25574825) Rheumatoid arthritis ( 30423114 24390342) Rosacea symptom severity ( 29771307) Skin aging (microtopography measurement) ( 28502801) Skin colour saturation ( 25963972) Skin pigmentation ( 30664655) Skin pigmentation traits ( 30166351) Skin, hair and eye pigmentation (multivariate analysis) ( 30664655) Squamous cell carcinoma ( 26829030 31174203) Sunburns ( 23548203) Systemic lupus erythematosus ( 33536424) Tanning ( 23548203) Type 1 diabetes ( 34012112 34127860) Vitiligo ( 27723757) White blood cell count ( 32888494) Youthful appearance (self-reported) ( 32339537)	Cerebral amyloid angiopathy x APOEe4 status interaction in Alzheimer’s disease ( 34020725) Electrocardiogram morphology (amplitude at temporal datapoints) ( 32916098) F-cell distribution in sickle cell anaemia ( 21326311) Metabolite levels ( 23823483) Type 2 diabetes ( 30054458)
Interacting Genes		22 interacting genes: BATF BCL6 ELP1 ETV7 FKBP4 GIPC2 HOXB13 HOXC11 IRAK1 MYD88 NFATC2 PRDM1 PROX1 SPI1 SPIB STAT6 TLK2 TOP1 TRAF2 TSEN54 USP4 YTHDC2	4 interacting genes: IRAK1 IRF4 PTEN SRPK2
Entrez ID		3662	64848
HPRD ID		03543	11690
Ensembl ID		ENSG00000137265	ENSG00000047188
Uniprot IDs		Q15306	Q9H6S0
PDB IDs		2DLL 6TD4 7JM4 7O56 7OGS 7OOT 7RH2	2YU6 6K6U 6LR2 9H35 9H36
Enriched GO Terms of Interacting Partners?		Sequence-specific DNA Binding Sequence-specific Double-stranded DNA Binding RNA Polymerase II Cis-regulatory Region Sequence-specific DNA Binding DNA-binding Transcription Repressor Activity, RNA Polymerase II-specific Positive Regulation Of Multicellular Organismal Process Regulation Of Lymphocyte Activation Nucleoplasm Leukocyte Activation Involved In Immune Response B Cell Activation Involved In Immune Response DNA-binding Transcription Activator Activity, RNA Polymerase II-specific Cell Activation Involved In Immune Response Regulation Of Cell Activation DNA-binding Transcription Factor Activity Somatic Recombination Of Immunoglobulin Genes Involved In Immune Response Isotype Switching To IgE Isotypes Isotype Switching Positive Regulation Of B Cell Activation Somatic Diversification Of Immunoglobulins Involved In Immune Response Positive Regulation Of Gene Expression B Cell Activation Regulation Of Macromolecule Metabolic Process Somatic Recombination Of Immunoglobulin Gene Segments Leukocyte Activation Chromatin Lipopolysaccharide-mediated Signaling Pathway DNA-binding Transcription Factor Activity, RNA Polymerase II-specific Lymphocyte Activation Involved In Immune Response DNA Binding Regulation Of Gene Expression Somatic Diversification Of Immunoglobulins Negative Regulation Of RNA Metabolic Process Somatic Cell DNA Recombination Nucleus Toll Signaling Pathway Macrophage Differentiation Regulation Of B Cell Activation Regulation Of Macromolecule Biosynthetic Process Regulation Of Multicellular Organismal Process Cell Activation Positive Regulation Of Macromolecule Biosynthetic Process Interleukin-33-mediated Signaling Pathway Lymphocyte Activation Regulation Of Metabolic Process Regulation Of Primary Metabolic Process T-helper 2 Cell Differentiation Negative Regulation Of Nucleobase-containing Compound Metabolic Process Immune System Process Myeloid Leukocyte Differentiation Regulation Of Immune Response Negative Regulation Of Transcription By RNA Polymerase II	Regulation Of Smooth Muscle Cell Proliferation Toll Signaling Pathway Positive Regulation Of Biosynthetic Process Negative Regulation Of Signal Transduction Positive Regulation Of Macromolecule Metabolic Process Regulation Of Nucleobase-containing Compound Metabolic Process Phosphate-containing Compound Metabolic Process Positive Regulation Of Metabolic Process Positive Regulation Of Cell Population Proliferation Protein Serine Kinase Activity Defense Response Response To Other Organism Intracellular Signaling Cassette Defense Response To Other Organism Regulation Of RNA Metabolic Process Protein Phosphorylation Response To External Biotic Stimulus Positive Regulation Of Gene Expression Response To Stress Negative Regulation Of Cell Communication Interleukin-33-mediated Signaling Pathway Positive Regulation Of Macromolecule Biosynthetic Process Toll-like Receptor 9 Signaling Pathway Toll-like Receptor 2 Signaling Pathway Negative Regulation Of Signaling Negative Regulation Of Synaptic Vesicle Clustering Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase Activity Myelin Sheath Adaxonal Region Phosphatidylinositol-3,4-bisphosphate 3-phosphatase Activity Negative Regulation Of Keratinocyte Migration Inositol-1,3,4,5-tetrakisphosphate 3-phosphatase Activity Negative Regulation Of Peptidyl-serine Phosphorylation Regulation Of Synaptic Vesicle Clustering Postsynaptic Specialization Assembly Negative Regulation Of Wound Healing, Spreading Of Epidermal Cells Neuron-neuron Synaptic Transmission Phosphatidylinositol Phosphate Phosphatase Activity Central Nervous System Myelin Maintenance Negative Regulation Of Cell Size Presynaptic Membrane Organization Schmidt-Lanterman Incisure Phosphatidylinositol 3-kinase/protein Kinase B Signal Transduction Rhythmic Synaptic Transmission Anaphase-promoting Complex Binding Postsynaptic Density Assembly Forebrain Morphogenesis Negative Regulation Of Excitatory Postsynaptic Potential Presynaptic Membrane Assembly Inositol-1,3,4,5,6-pentakisphosphate 3-phosphatase Activity R-loop Processing
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