TRIM27 and SMARCD1

Number of citations of the paper that reports this interaction (PubMedID 32296183)
86

Data Source:
BioGRID (two hybrid)

		TRIM27	SMARCD1
Description		tripartite motif containing 27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
Image		No pdb structure
GO Annotations	Cellular Component	Fibrillar Center Nucleus Nucleoplasm Nucleolus Cytoplasm Endosome Early Endosome Cytosol PML Body Nuclear Membrane	Nucleus Nucleoplasm SWI/SNF Complex Intracellular Membrane-bounded Organelle NpBAF Complex NBAF Complex
	Molecular Function	Nucleic Acid Binding DNA Binding Transcription Coactivator Activity Ubiquitin-protein Transferase Activity Protein Binding Zinc Ion Binding SUMO Transferase Activity Protein Kinase Binding Identical Protein Binding Protein Homodimerization Activity Metal Ion Binding Ubiquitin Protein Ligase Activity	Chromatin Binding Transcription Coregulator Activity Transcription Coactivator Activity Signaling Receptor Binding Protein Binding Molecular Adaptor Activity
	Biological Process	Negative Regulation Of Transcription By RNA Polymerase II Protein Polyubiquitination Negative Regulation Of Adaptive Immune Response Negative Regulation Of Protein Kinase Activity Spermatogenesis Regulation Of Gene Expression Positive Regulation Of Autophagy Protein Ubiquitination Protein Sumoylation Negative Regulation Of Interleukin-2 Production Negative Regulation Of Tumor Necrosis Factor Production Positive Regulation Of Interferon-gamma Production Regulation Of Protein Localization Negative Regulation Of Viral Transcription Arp2/3 Complex-mediated Actin Nucleation Retrograde Transport, Endosome To Golgi Positive Regulation Of I-kappaB Kinase/NF-kappaB Signaling Innate Immune Response Negative Regulation Of Gene Expression, Epigenetic Positive Regulation Of Transcription, DNA-templated Regulation Of Viral Entry Into Host Cell Positive Regulation Of DNA-binding Transcription Factor Activity Positive Regulation Of NF-kappaB Transcription Factor Activity Protein K63-linked Ubiquitination Negative Regulation Of Calcium Ion Import	Nucleosome Disassembly Chromatin Remodeling Regulation Of Transcription By RNA Polymerase II Nervous System Development Chromatin-mediated Maintenance Of Transcription Cellular Response To Fatty Acid
Pathways		SUMOylation of ubiquitinylation proteins Regulation of PTEN stability and activity Suppression of apoptosis	RMTs methylate histone arginines RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known
Drugs
Diseases
GWAS		Alopecia areata ( 25608926) Asthma ( 32296059 31619474 29273806) Asthma and major depressive disorder ( 31619474) Autism spectrum disorder or schizophrenia ( 28540026) Blood protein levels ( 28240269) Body size at age 10 ( 32376654) Brain morphology (MOSTest) ( 32665545) Childhood and early adolescence aggressive behavior ( 26087016) Daytime sleep phenotypes ( 27126917) Estimated glomerular filtration rate in diabetes ( 31451708) Experiencing mood swings ( 29500382) Feeling miserable ( 29500382) Fish- and plant-related diet ( 32066663) General risk tolerance (MTAG) ( 30643258) Hand grip strength ( 29691431) Heel bone mineral density ( 30598549) Hemoglobin levels ( 32327693) Liver iron content ( 34128465) Lung cancer in ever smokers ( 28604730) Neurociticism ( 29500382) Platelet aggregation ( 20526338) Pre-treatment viral load in HIV-1 infection ( 31219150) Sarcoidosis (Lofgren's syndrome vs non-Lofgren's syndrome) ( 26651848) Schizophrenia ( 30285260) Social communication problems ( 24047820) Subcortical volume (MOSTest) ( 32665545) Triglyceride levels ( 32203549)	Body fat distribution (arm fat ratio) ( 30664634) Body fat distribution (leg fat ratio) ( 30664634) Body fat distribution (trunk fat ratio) ( 30664634)
Interacting Genes		356 interacting genes: ABCA1 ABCF3 ABHD17A ACSF3 AEN AMMECR1 AMOTL2 AP1M1 ARHGEF3 ARHGEF5 ARID5A ARIH2 ARMC7 ARNT2 ARPIN ATPAF2 ATXN7 AXIN1 BABAM1 BAG1 BAG3 BAG5 BEGAIN BEX2 BMI1 BMP7 BYSL C1orf109 CAPN7 CARD10 CATSPER1 CBX8 CCDC102B CCDC185 CCDC187 CCDC198 CCDC87 CCDC92 CCHCR1 CDC20B CDC23 CDC7 CDK18 CDKL3 CFAP206 CHCHD3 CHD4 CHUK CKS1B CLK2 CNNM3 COX5B CPNE2 CPNE7 CREB5 CSNK2B CSRP2 CWF19L2 DBF4B DCX DDX6 DGCR6 DMRT3 DNMT1 DTNB DTNBP1 EHHADH EID1 EIF3D EIF3E EIF4A3 EIF4E EIF4E2 ENKD1 EPC1 ERCC3 EXOC8 FAM110A FAM126A FAM126B FAM161A FAM193B FAM214A FAM214B FAM83A FAM90A1 FANCM FARS2 FASTKD5 FBF1 FBXL19 FBXW5 FHL3 FNDC11 FOXB1 FOXC2 FXYD6 GADD45GIP1 GAS2L2 GATAD2B GCC2-AS1 GEM GFAP GFI1B GFM2 GLYCTK GNE GNPDA2 GPANK1 GPKOW GRB14 GRB2 GSE1 GTF2F1 HAPLN2 HAUS1 HCK HDAC1 HDAC4 HGS HIP1R HNRNPLL HOXB5 HOXB9 HOXC8 HR IGFN1 IKBKB IKBKE IL16 ILF2 ILK INO80B INPP5J IP6K3 IQCE IQCN IQUB JOSD1 KANSL1 KAT14 KAT5 KCTD15 KCTD9 KIF1A KIF9 KIFC3 KRT3 KRT75 KRT76 LAGE3 LASP1 LENG1 LGALS14 LINC00526 LINGO1 LMNB2 LMO1 LMO4 LNX1 LONRF1 MAD2L2 MAGEA11 MAGED4B MAGEF1 MAGOHB MAPKBP1 MAT2B MBD4 MCM7 MCOLN1 MDM2 MED21 MEMO1 MIA3 MID2 MOS MRPL40 MSRB1 MTMR6 MVP MYO15B NCK2 NCOA1 NDE1 NDEL1 NEBL NEDD9 NEIL2 NEK6 NELFE NIF3L1 NME7 NOTCH2NLA NR1D2 NTAQ1 NUDT21 OAS1 OGT OTUB2 P2RX7 PIAS1 PIAS2 PIAS3 PIAS4 PIBF1 PIMREG PIN1 PLEKHN1 PML POLE2 POLR1C POLR3C POM121 PPID PPL PPP1R18 PRAM1 PRKAA1 PRPF18 PRPF31 PRR35 PSMA1 PSMB1 PSMB3 PTPMT1 PTPN23 PUS7L QARS1 RAB29 RAMAC RB1 RBM23 RBM41 RBX1 RCOR3 REL RHPN1 RIBC1 RIN1 RNF213 RNF25 RNF6 RSPH14 RXRB SCNM1 SDCBP SH2D4A SHANK3 SIAH1 SIRPA SLC15A3 SMARCB1 SMARCD1 SMG9 SNRPA SNRPB2 SORBS3 SPATA2 SPATC1L SRSF2 STAMBPL1 STK16 STK25 STK26 SYNGAP1 SYT17 SYT6 TACO1 TBC1D22B TBK1 TCEA2 TCEANC TCHP TEAD4 TEX33 THOC1 TLE5 TMSB4X TMSB4XP6 TNS4 TP53 TPM3 TPRKB TRAF4 TRAF5 TRIM11 TRIM21 TRIM23 TRIM29 TRIM31 TRIM32 TRIM42 TRIM43 TRIM50 TRIM55 TRIM9 TSGA10IP TSHZ3 TTLL10 TUBGCP4 TUFT1 TXNDC9 UBASH3A UBE2A UBE2D1 UBE2D2 UBE2D3 UBE2D4 UBE2E1 UBE2E2 UBE2E3 UBE2H UBE2I UBE2J1 UBE2K UBE2L6 UBE2N UBE2O UBE2T UBE2U UBE2W UBE2Z UBL5 UCHL3 UCHL5 UHRF2 USE1 USP2 UTP14C UTP23 VEZF1 VPS25 VPS28 VPS9D1 WT1-AS XPA YJU2 ZBTB16 ZC2HC1C ZFC3H1 ZFHX3 ZFYVE21 ZGPAT ZMYND19 ZNF250 ZNF384 ZNF414 ZNF417 ZNF446 ZNF572 ZNF580 ZNF581 ZNF587 ZNF688 ZNF79	157 interacting genes: ABI1 ABI2 ABI3 ADAT2 ANKRD23 ANKRD49 ANKS1A ANP32B APOA5 AR ARMC10 ARRDC3 BCAS2 BEND5 BEX3 BHLHB9 BLOC1S5 BRWD1 C19orf54 C1orf109 C4BPA CALCOCO2 CCDC102B CCDC197 CCDC33 CCDC85B CDC5L CDR2 CDSN CDX2 CEACAM6 CHFR CHN2 CLNK COG6 COL1A2 CORO1A CUEDC1 CYSRT1 DCTN2 DISC1 EGFL7 EIF4G1 ESR1 ESS2 FAM136A FAM161A FBXO7 FEZ1 FOS FUS GATA1 GCC1 GIGYF1 GINS3 GOLGA6L9 GRAMD4 HES6 HNRNPC HOMEZ HOXD3 HSF2BP HSPB1 IGKC IKBIP IKZF3 INSC IQCB1 JUN KATNBL1 KDM1A KEAP1 KIAA0753 KLF1 KMT5B KRT15 KRT16 KRT18 KRT27 KRT31 KRT34 KRT37 KRT38 KRT75 LDB2 LDOC1 LZTS2 MAGEA2 MAGEA2B MAGEA6 MED4 MKRN3 MTNR1B MTUS2 NAB2 NECAB2 NELFA NME1 NONO NR1H4 NR3C1 NUCB2 NUDT16L1 NUTM1 OGT PACSIN3 PAICS PBX4 PCBD1 PGR PICK1 PIH1D1 PKNOX2 PLAGL2 PPM1J PRDX1 PRMT6 PSTPIP1 RIF1 RORB RPS29 SCARA5 SCHIP1 SCNM1 SERTAD3 SHISA6 SMARCB1 SMUG1 SNF8 SPSB2 STH STMN3 SYCE1L TCP10L THOC7 TLE5 TNIP2 TP53 TRIM27 TRIM54 TRIM72 USHBP1 USP54 VPS37B WASHC1 WWP2 YJU2B YWHAG ZC2HC1C ZMAT5 ZMYND12 ZNF417 ZNF438 ZNF511 ZNF629 ZNF655 ZNF69
Entrez ID		5987	6602
HPRD ID		15996	03438
Ensembl ID		ENSG00000204713	ENSG00000066117
Uniprot IDs		A0A1U9X8R9 P14373	Q96GM5
PDB IDs			6LTH 6LTJ
Enriched GO Terms of Interacting Partners?
Tagcloud ?
Tagcloud (Difference) ?
Tagcloud (Intersection) ?