BPTF and H3-3A

Number of citations: 0 (PubMedID 16728976)
Data Source: HPRD (in vitro)

		BPTF	H3-3A
Name		bromodomain PHD finger transcription factor	H3.3 histone A
Structure
GO Annotations	Cellular Component	Chromatin Nucleus Nucleoplasm Cytoplasm NURF Complex Dendrite Cell Body Perinuclear Region Of Cytoplasm Extracellular Exosome ATPase Complex	Chromosome, Centromeric Region Chromosome, Telomeric Region Chromatin Nucleosome Inner Kinetochore Barr Body Extracellular Region Nucleus Nucleoplasm Chromosome Protein-containing Complex Extracellular Exosome
	Molecular Function	RNA Polymerase II Cis-regulatory Region Sequence-specific DNA Binding Protein Binding ATP-dependent Activity, Acting On DNA Zinc Ion Binding Sequence-specific DNA Binding Metal Ion Binding	RNA Polymerase II Cis-regulatory Region Sequence-specific DNA Binding RNA Polymerase II Core Promoter Sequence-specific DNA Binding DNA Binding Protein Binding Structural Constituent Of Chromatin Nucleosomal DNA Binding Protein Heterodimerization Activity
	Biological Process	Negative Regulation Of Transcription By RNA Polymerase II Embryonic Placenta Development Chromatin Organization Chromatin Remodeling Regulation Of DNA-templated Transcription Regulation Of Transcription By RNA Polymerase II Brain Development Endoderm Development Anterior/posterior Pattern Specification Negative Regulation Of DNA-templated Transcription Positive Regulation Of Transcription By RNA Polymerase II Cellular Response To Nerve Growth Factor Stimulus	Oocyte Maturation Osteoblast Differentiation Nucleosome Assembly Nucleus Organization Spermatogenesis Spermatid Development Single Fertilization Embryo Implantation Cell Population Proliferation Male Gonad Development Positive Regulation Of Cell Growth Pericentric Heterochromatin Formation Subtelomeric Heterochromatin Formation Telomere Organization Multicellular Organism Growth Muscle Cell Differentiation Oogenesis Regulation Of Centromere Complex Assembly Negative Regulation Of Chromosome Condensation
Pathways		None	Pre-NOTCH Transcription and Translation Formation of the beta-catenin:TCF transactivating complex PRC2 methylates histones and DNA Condensation of Prophase Chromosomes Oxidative Stress Induced Senescence Senescence-Associated Secretory Phenotype (SASP) SIRT1 negatively regulates rRNA expression ERCC6 (CSB) and EHMT2 (G9a) positively regulate rRNA expression NoRC negatively regulates rRNA expression NoRC negatively regulates rRNA expression B-WICH complex positively regulates rRNA expression DNA methylation Transcriptional regulation by small RNAs Activation of anterior HOX genes in hindbrain development during early embryogenesis Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3 Assembly of the ORC complex at the origin of replication RNA Polymerase I Promoter Opening RNA Polymerase I Promoter Escape RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function RUNX1 regulates transcription of genes involved in differentiation of HSCs Estrogen-dependent gene expression Meiotic recombination Transcriptional regulation of granulopoiesis Inhibition of DNA recombination at telomere Defective pyroptosis Negative Regulation of CDH1 Gene Transcription Amyloid fiber formation Chromatin modifications during the maternal to zygotic transition (MZT) Replacement of protamines by nucleosomes in the male pronucleus Factors involved in megakaryocyte development and platelet production MLL4 and MLL3 complexes regulate expression of PPARG target genes in adipogenesis and hepatic steatosis MLL4 and MLL3 complexes regulate expression of PPARG target genes in adipogenesis and hepatic steatosis Regulation of endogenous retroelements by KRAB-ZFP proteins Regulation of endogenous retroelements by KRAB-ZFP proteins Regulation of endogenous retroelements by the Human Silencing Hub (HUSH) complex Regulation of endogenous retroelements by the Human Silencing Hub (HUSH) complex Regulation of endogenous retroelements by Piwi-interacting RNAs (piRNAs) Regulation of PD-L1(CD274) transcription
GWAS		Adult body size ( 32376654 ) Age at first sexual intercourse ( 34211149 ) Alanine aminotransferase levels ( 33547301 ) Alcohol dependence symptom count ( 27151647 ) Apolipoprotein B levels ( 32203549 ) Body mass index ( 28892062 ) Brain morphology (MOSTest) ( 32665545 ) EGFR mutation-positive lung adenocarcinoma ( 27501781 ) Endometrial cancer ( 30093612 ) Endometrial cancer (endometrioid histology) ( 30093612 ) Eosinophil count ( 27863252 ) Eosinophil percentage of granulocytes ( 27863252 ) Eosinophil percentage of white cells ( 27863252 ) Hand grip strength ( 29691431 ) HDL cholesterol ( 30275531 ) Height ( 31562340 ) Liver enzyme levels (gamma-glutamyl transferase) ( 33972514 ) Loneliness ( 31518406 29970889 ) Loneliness (MTAG) ( 29970889 ) Lung adenocarcinoma ( 22797724 ) Lung cancer ( 23143601 ) Macular thickness ( 30535121 ) Metabolic syndrome ( 31589552 ) Neutrophil percentage of granulocytes ( 27863252 ) Non-small cell lung cancer ( 31326317 ) Psoriasis ( 25854761 ) Refractive error ( 32231278 ) Regular attendance at a religious group ( 29970889 ) Risk-taking tendency (4-domain principal component model) ( 30643258 ) Sum eosinophil basophil counts ( 27863252 ) Triglyceride levels ( 32154731 32203549 33339817 ) Type 2 diabetes ( 30297969 ) Waist circumference adjusted for body mass index ( 34021172 )	No GWAS studies recorded
Interacting Genes		10 interacting genes: H3-3A H3-4 H4C9 KEAP1 MAZ NFE2L2 SMAD2 SMAD3 SQSTM1 SUMO2	44 interacting genes: ASF1A ASF1B BPTF BRD7 CARM1 CBX2 CBX4 CBX6 CBX7 CBX8 CEBPA CHD1 CREBBP DCAF1 EP300 ESR1 HMGB2 HPF1 KAT2B KMT2A MAPK9 NEDD4 NOS3 PARP10 PARP2 PELP1 PIM1 PPM1D PPP1CA PPP1CB SET SETD7 SMARCA1 SMARCA4 SMARCA5 SS18 SSRP1 SUPT16H SUV39H1 TIAM1 TLE2 UBN1 UHRF1 ZMYND11
Entrez ID		2186	3020
HPRD ID		03490	03082
Ensembl ID		ENSG00000171634	ENSG00000163041
Uniprot IDs		J3QQK4 Q12830	B2R4P9 P84243
PDB IDs		2F6J 2F6N 2FSA 2FUI 2FUU 2RI7 3QZS 3QZT 3QZV 3UV2 5H6Y 5R4G 5R4H 5R4I 5R4J 5R4K 5R4L 5R4M 5R4N 5R4O 6AZE 6LU5 6LU6 7DMY 7DN4 7F5D 7F5E 7JT4 7K6R 7K6S 7KDW 7KDZ 7LP0 7LPK 7LRK 7LRO 7M2E 7RWN 7RWO 7RWP 7RWQ 7VD4 8AG2 8F6G 8OU2	2L43 3ASK 3ASL 3AV2 3JVK 3MUK 3MUL 3QL9 3QLA 3QLC 3WTP 4GNE 4GNF 4GNG 4GU0 4GUR 4GUS 4GY5 4H9N 4H9O 4H9P 4H9Q 4H9R 4H9S 4HGA 4L58 4N4I 4O62 4QQ4 4TMP 4U7T 4W5A 5B32 5B33 5BNV 5BNX 5DWQ 5DX0 5JA4 5JJY 5JLB 5KDM 5X7X 6A5L 6A5O 6A5P 6A5R 6A5T 6A5U 6HGT 6INQ 6IR9 6J4W 6J4X 6J4Y 6J4Z 6J50 6J51 6J9J 6PZV 6QXZ 6R0C 6RNY 6U04 7A08 7CIZ 7CJ0 7CWH 7OKP 7V1L 7V1M 7VCQ 7W5M 7WBV 7WBW 7WBX 7XSE 7XSX 7XSZ 7XT7 7XTD 7XTI 8JH2 8JH3 8JH4 8KB5 9B3P 9EOZ 9J0N 9J0O 9J0P
GO Terms Enriched among Interactors		Ubiquitin Protein Ligase Binding Paraxial Mesoderm Morphogenesis RNA Polymerase II-specific DNA-binding Transcription Factor Binding Mesoderm Morphogenesis SMAD Protein Complex Pericardium Development Trophoblast Cell Migration Heteromeric SMAD Protein Complex Nucleoplasm Structural Constituent Of Chromatin Embryonic Foregut Morphogenesis Nodal Signaling Pathway Co-SMAD Binding Nucleosome Assembly DNA Binding Primary MiRNA Processing Transforming Growth Factor Beta Receptor Binding Negative Regulation Of Ferroptosis Positive Regulation Of Ubiquitin-dependent Protein Catabolic Process Regulation Of Ferroptosis Positive Regulation Of Proteasomal Protein Catabolic Process I-SMAD Binding Nucleosome Regulation Of Protein Catabolic Process Nucleus Nucleosome Organization Inclusion Body Positive Regulation Of Proteolysis Involved In Protein Catabolic Process SMAD Protein Signal Transduction Regulation Of Cell Differentiation Response To Angiotensin Regulation Of Transcription By RNA Polymerase II Disordered Domain Specific Binding R-SMAD Binding RNA Polymerase II Cis-regulatory Region Sequence-specific DNA Binding Chromosome, Telomeric Region Embryonic Cranial Skeleton Morphogenesis Activin Receptor Signaling Pathway Positive Regulation Of RNA Biosynthetic Process Positive Regulation Of DNA-templated Transcription Regulation Of Response To Oxidative Stress Regulation Of Ubiquitin-dependent Protein Catabolic Process Protein-DNA Complex Assembly Endoderm Development MiRNA Processing Positive Regulation Of RNA Metabolic Process Ubiquitin-dependent Protein Catabolic Process Positive Regulation Of Proteolysis Regulation Of Proteasomal Protein Catabolic Process Positive Regulation Of Catabolic Process	Chromatin Organization Chromatin Remodeling Chromatin Binding Nucleoplasm Nucleus Regulation Of DNA-templated Transcription Negative Regulation Of DNA-templated Transcription Regulation Of RNA Biosynthetic Process Negative Regulation Of RNA Biosynthetic Process Regulation Of RNA Metabolic Process Chromatin Negative Regulation Of RNA Metabolic Process Regulation Of Nucleobase-containing Compound Metabolic Process Negative Regulation Of Nucleobase-containing Compound Metabolic Process Negative Regulation Of Macromolecule Biosynthetic Process Regulation Of Gene Expression Negative Regulation Of Biosynthetic Process Regulation Of Macromolecule Biosynthetic Process Nucleosome Organization Negative Regulation Of Macromolecule Metabolic Process Chromosome Regulation Of Macromolecule Metabolic Process Histone Binding Negative Regulation Of Metabolic Process Regulation Of Primary Metabolic Process Cellular Response To Stress Protein-DNA Complex Assembly DNA Damage Response Regulation Of Transcription By RNA Polymerase II Negative Regulation Of Transcription By RNA Polymerase II Regulation Of Metabolic Process Nucleosome Assembly Positive Regulation Of Nucleobase-containing Compound Metabolic Process Positive Regulation Of RNA Metabolic Process PRC1 Complex Rhythmic Process Positive Regulation Of RNA Biosynthetic Process Positive Regulation Of DNA-templated Transcription Epigenetic Regulation Of Gene Expression DNA Metabolic Process PcG Protein Complex Positive Regulation Of Macromolecule Metabolic Process N-terminal Peptidyl-lysine Acetylation Positive Regulation Of Biosynthetic Process Nucleosome Binding Nucleic Acid Metabolic Process Positive Regulation Of Macromolecule Biosynthetic Process DNA Repair Nucleolus Positive Regulation Of Metabolic Process